Browse Element(s) Details


OsAffx.19469.2.S1_x_at

Description tigr:9639.m00278
TID=OsAffx.19469.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SET domain protein 105
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0370011/11YDG/SRA domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19469.2.S1_x_at--562--10432Chr12:1351456..1351480 (25 bp)
TTATGAGTGCTCCTCTAACTGTCAG
NONE
OsAffx.19469.2.S1_x_at--455--5471Chr11:1439091..1439115 (25 bp)
GAACTTTGAGGTTTTCTGGACTGGA
LOC_Os11g03700
OsAffx.19469.2.S1_x_at--145--7492Chr12:1351336..1351359 (24 bp)
GTGGGATCCTATCCGTGCTGGCACA
NONE
OsAffx.19469.2.S1_x_at--793--3572Chr12:1351313..1351337 (25 bp)
CATTCATTTGTGAGTACGCCGGTGA
NONE
OsAffx.19469.2.S1_x_at--618--1411Chr11:1438956..1438980 (25 bp)
AGACAAATATACCTTTCGCGCTTCA
LOC_Os11g03700
OsAffx.19469.2.S1_x_at--180--771Chr11:1438932..1438956 (25 bp)
ATGTCCCGGCAATAAGGCTTTAAGC
LOC_Os11g03700
OsAffx.19469.2.S1_x_at--385--5292Chr12:1351102..1351126 (25 bp)
GAATGTGGCTCGTTTTCTGAACCAT
NONE
OsAffx.19469.2.S1_x_at--148--311Chr11:1438786..1438810 (25 bp)
ATAGCTGTTCTCCAAATCTCCTTTG
LOC_Os11g03700
OsAffx.19469.2.S1_x_at--931--10112Chr12:1351041..1351065 (25 bp)
TATGACCATGGCGATGACAGCTACC
NONE
OsAffx.19469.2.S1_x_at--732--10732Chr12:1351001..1351025 (25 bp)
TTGCAATGGAACATATCCCTCCCAT
NONE
OsAffx.19469.2.S1_x_at--506--6112Chr12:1350927..1350951 (25 bp)
GAGGGAAAACCCTTCAAAGCTTGCA
NONE
Target Sequence 
TTATGAGTGCTCCTCTAACTGTCAGTGTTCTCATAATTGTCGAAACAGGATCACACAGAAGGGTATAAAACTGAACTTTG
AGGTTTTCTGGACTGGAGACCGTGGCTGGGGTCTGCGGTCGTGGGATCCTATCCGTGCTGGCACATTCATTTGTGAGTAC
GCCGGTGAAGTCATTGATGAAACTAAGATGGACATAGATGTTGAGGAAGACAAATATACCTTTCGCGCTTCATGTCCCGG
CAATAAGGCTTTAAGCTGGAATTTGGGAGAAGAATTACTTGAAGAAAAAAGTACGGCTGTGATAACCAAGAACTTTAAGA
AACTACCAATCATCATAAGAGCAAACAATGAAGGGAATGTGGCTCGTTTTCTGAACCATAGCTGTTCTCCAAATCTCCTT
TGGCAAGCTGTACAGTATGACCATGGCGATGACAGCTACCCACATATCATGTTTTTTGCAATGGAACATATCCCTCCCAT
GACTGAACTGACTTATGATTATGGTACAAGAGGTGCTCCCCCTGGCTTTGAGGGAAAACCCTTCAAAGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19469.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis