Browse Element(s) Details


OsAffx.19601.1.S1_at

Description tigr:9640.m01022
TID=OsAffx.19601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g108301/11retrotransposon protein, putative, unclassified
LOC_Os12g108101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified
LOC_Os12g10840OsAffx.31690.1.S1_at11/1112+5846573..5846888hypothetical protein
LOC_Os12g10850OsAffx.19602.1.S1_at11/1112+5848741..5851370A/G-specific adenine glycosylase family protein
LOC_Os12g10859NANA12+5852972..5853344NA
LOC_Os12g10870Os.54355.1.S1_at11/1112+5855199..5858246Leucine Rich Repeat family protein, expressed
LOC_Os12g10880OsAffx.19603.1.S1_at9/1112+5865022..5865882hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19601.1.S1_at--127--1951Chr12:5817581..5817768 (25 bp)
ACGGCGCAAGTTTGGAGTTCAAGCT
LOC_Os12g10810
OsAffx.19601.1.S1_at--329--6651Chr12:5818439..5818463 (25 bp)
GTTGACCAGGTTGAGATGCTTTTCT
NONE
OsAffx.19601.1.S1_at--462--8071Chr12:5818477..5818501 (25 bp)
GGAGAATAGCTTTTGCAGTGACTAC
NONE
OsAffx.19601.1.S1_at--1079--5011Chr12:5818491..5818515 (25 bp)
GCAGTGACTACAAACTCCTTAGAGT
NONE
OsAffx.19601.1.S1_at--627--6111NONE
GAGTGCACCACTCTGGTGAATATCA
NONE
OsAffx.19601.1.S1_at--384--5231Chr12:5819659..5819683 (25 bp)
GAATATCACACTTCATTGGGCTGTA
NONE
OsAffx.19601.1.S1_at--701--10811Chr12:5819674..5819698 (25 bp)
TTGGGCTGTACTCACAAGGTTCTGT
NONE
OsAffx.19601.1.S1_at--387--2911Chr12:5819689..5819713 (25 bp)
AAGGTTCTGTATGGTACTGATCCTG
NONE
OsAffx.19601.1.S1_at--569--6371Chr12:5819707..5819731 (25 bp)
GATCCTGTGTATCATTTTCTTCCTG
NONE
OsAffx.19601.1.S1_at--775--171Chr12:5819720..5819744 (25 bp)
ATTTTCTTCCTGCTGAGCTGGTTAC
NONE
OsAffx.19601.1.S1_at--182--8892Chr12:5819763..5819787 (25 bp)
TGAGGCATCCACTTTGTTGCAAGAT
NONE
Target Sequence 
ACGGCGCAAGTTTGGAGTTCAAGCTTGTTCATCAGCACGACTCAATCAGTCAGAGATTTGAGTCCATGGTTATGCCACAT
GGAAGGAGTGAGAGAGGGGGTTAGTGTGGGGGACTGTGGAGGAGATGATGAGGAGGTTGACCAGGTTGAGATGCTTTTCT
TATGTTTCAGCTGGGAGAATAGCTTTTGCAGTGACTACAAACTCCTTAGAGTGCACCACTCTGGTGAATATCACACTTCA
TTGGGCTGTACTCACAAGGTTCTGTATGGTACTGATCCTGTGTATCATTTTCTTCCTGCTGAGCTGGTTACTGGAGGTGT
TGGTGATTATGAGGCATCCACTTTGTTGCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis