Browse Element(s) Details


OsAffx.19612.1.S1_at

Description tigr:9640.m01078
TID=OsAffx.19612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1135011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11300OsAffx.22699.1.S1_x_at2/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11300OsAffx.16111.1.S1_at1/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11310OsAffx.3761.1.S1_x_at1/1112+6095569..6098384hypothetical protein
LOC_Os12g11310OsAffx.30421.1.S1_s_at1/1112+6095569..6098384hypothetical protein
LOC_Os12g11330Os.45976.1.S1_x_at3/1112+6103451..6108924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11330OsAffx.29316.1.S1_x_at1/1112+6103451..6108924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11340Os.46306.1.S1_x_at4/1112+6111643..6116727transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11350OsAffx.19612.1.S1_at11/1112+6118813..6120373hypothetical protein
LOC_Os12g11350OsAffx.4826.1.S1_at1/1112+6118813..6120373hypothetical protein
LOC_Os12g11360NANA12+6133453..6133839hypothetical protein
LOC_Os12g11370OsAffx.31701.1.S1_at11/1112+6137645..6140801Leucine Rich Repeat family protein, expressed
LOC_Os12g11370Os.7688.2.S1_x_at1/1112+6137645..6140801Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19612.1.S1_at--348--3751Chr12:6120301..6120325 (25 bp)
CTCACGTTGTTCGTCATGGCGGCGT
LOC_Os12g11350
OsAffx.19612.1.S1_at--327--9691Chr12:6120300..6120324 (25 bp)
TCACGTTGTTCGTCATGGCGGCGTT
LOC_Os12g11350
OsAffx.19612.1.S1_at--305--3351Chr12:6120299..6120323 (25 bp)
CACGTTGTTCGTCATGGCGGCGTTG
LOC_Os12g11350
OsAffx.19612.1.S1_at--775--3931Chr12:6120282..6120306 (25 bp)
CGGCGTTGCATGAGGCGCCCACGAT
LOC_Os12g11350
OsAffx.19612.1.S1_at--719--8371Chr12:6120281..6120305 (25 bp)
GGCGTTGCATGAGGCGCCCACGATG
LOC_Os12g11350
OsAffx.19612.1.S1_at--621--4991Chr12:6120275..6120299 (25 bp)
GCATGAGGCGCCCACGATGGCTTCC
LOC_Os12g11350
OsAffx.19612.1.S1_at--134--3511Chr12:6120274..6120298 (25 bp)
CATGAGGCGCCCACGATGGCTTCCG
LOC_Os12g11350
OsAffx.19612.1.S1_at--34--711Chr12:6120273..6120297 (25 bp)
ATGAGGCGCCCACGATGGCTTCCGC
LOC_Os12g11350
OsAffx.19612.1.S1_at--533--831Chr12:6120259..6120283 (25 bp)
ATGGCTTCCGCCACGAGGGTTTTGC
LOC_Os12g11350
OsAffx.19612.1.S1_at--342--8471Chr12:6120258..6120282 (25 bp)
TGGCTTCCGCCACGAGGGTTTTGCT
LOC_Os12g11350
OsAffx.19612.1.S1_at--695--8271Chr12:6120257..6120281 (25 bp)
GGCTTCCGCCACGAGGGTTTTGCTA
LOC_Os12g11350
Target Sequence 
CTCACGTTGTTCGTCATGGCGGCGTTGCATGAGGCGCCCACGATGGCTTCCGCCACGAGGGTTTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis