Browse Element(s) Details


OsAffx.19677.2.S1_s_at

Description tigr:9636.m02606
TID=OsAffx.19677.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g149209/11retrotransposon protein, putative, unclassified
LOC_Os08g264409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein
LOC_Os12g14920OsAffx.19677.1.S1_s_at11/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_s_at9/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_x_at4/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14930OsAffx.31745.2.S1_s_at11/1112+8538086..8538679Mitochondrial 22 kDa protein, putative, expressed
LOC_Os12g14939OsAffx.32108.1.S1_x_at1/1112+8541746..8541999hypothetical protein
LOC_Os12g14948NANA12+8545147..8545393NA
LOC_Os12g14960OsAffx.18193.1.S1_at1/1112+8559512..8560324Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19677.2.S1_s_at--800--7774Chr12:8533834..8533858 (25 bp)
GGTGCTCACCTATGCGTCAAACGAC
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--909--7314Chr12:8533835..8533859 (25 bp)
GTGCTCACCTATGCGTCAAACGACG
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--111--9096Chr12:8533836..8533860 (25 bp)
TGCTCACCTATGCGTCAAACGACGA
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--463--4836Chr12:8533837..8533861 (25 bp)
GCTCACCTATGCGTCAAACGACGAC
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--339--9614Chr12:8533839..8533863 (25 bp)
TCACCTATGCGTCAAACGACGACCG
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--398--3353Chr12:8533840..8533864 (25 bp)
CACCTATGCGTCAAACGACGACCGA
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--444--1753Chr12:8533841..8533865 (25 bp)
ACCTATGCGTCAAACGACGACCGAC
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--707--4193Chr12:8533842..8533866 (25 bp)
CCTATGCGTCAAACGACGACCGACG
LOC_Os12g14920
OsAffx.19677.2.S1_s_at--1106--3693Chr12:8533843..8533867 (25 bp)
CTATGCGTCAAACGACGACCGACGA
LOC_Os12g14920
Target Sequence 
GGTGCTCACCTATGCGTCAAACGACGACCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19677.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis