Browse Element(s) Details


OsAffx.19687.1.S1_s_at

Description tigr:9640.m01502
TID=OsAffx.19687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1545011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed
LOC_Os12g15480NANA12+8840680..8841244hypothetical protein
LOC_Os12g15490OsAffx.19689.1.S1_at11/1112+8843464..8843865hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19687.1.S1_s_at--235--9831Chr12:8819488..8819512 (25 bp)
TAAACGATATCACCCTCAGAAAAGA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--1125--5451Chr12:8819511..8819535 (25 bp)
GAACTGGCTGAAGTAACTCATGTCT
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--559--7051Chr12:8819523..8819547 (25 bp)
GTAACTCATGTCTCTAGTGCTCAAA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--150--6491Chr12:8819556..8819580 (25 bp)
GATACCTCAGAAGCATCCACTAAAG
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--693--2991Chr12:8819582..8819606 (25 bp)
AATGAGGGCATGCATTACTTCAGGG
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--609--271Chr12:8819703..8819727 (25 bp)
ATAGGATCTCACATGGATTGCCAAG
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--524--2331Chr12:8819864..8819888 (25 bp)
AAAGTTCTTCTAGCATTCTGGTGGA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--1057--6831Chr12:8819917..8819941 (25 bp)
GTTTCTACTAAGACGCCCTGCAAAA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--514--9051Chr12:8819943..8819967 (25 bp)
TGCAGATCAAGAAGGTTTCCACCAA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--557--7591Chr12:8820002..8820026 (25 bp)
GGGCATCTGAAGCTCAACAAGCACA
LOC_Os12g15450
OsAffx.19687.1.S1_s_at--679--8511Chr12:8820038..8820062 (25 bp)
TGGAAGCAGCAATCGATGGTCTCAA
LOC_Os12g15450
Target Sequence 
TAAACGATATCACCCTCAGAAAAGAACTGGCTGAAGTAACTCATGTCTCTAGTGCTCAAATTAATATTGATACCTCAGAA
GCATCCACTAAAGAAATGAGGGCATGCATTACTTCAGGGGAGGCAGATAAGAGAGGCAAGCTCAACAAGAAAAGGCTAGC
TGCTTTGGAAGGTGATGAAAAAGAAAATGAAGATATGTCAGTATCAAACCAAGAAATAGGATCTCACATGGATTGCCAAG
AAGTCAATAAGAAAGGAAACAATGAAAGTTCTTCTAGCATTCTGGTGGATGGAAATGCTGATCATGTCAAGAAAACAGTT
TCTACTAAGACGCCCTGCAAAAATGCAGATCAAGAAGGTTTCCACCAAAGCAGCGAAGTCGGAATGGAAGAAATGGTTAG
AGGGGCATCTGAAGCTCAACAAGCACAAAAGGCTCAACTGGAAGCAGCAATCGATGGTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19687.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis