Browse Element(s) Details


OsAffx.19699.1.S1_at

Description tigr:9640.m01554
TID=OsAffx.19699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15920OsAffx.19698.1.S1_at10/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15920OsAffx.22442.1.S1_x_at2/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15920Os.55580.1.S1_at1/1112+9066427..9074526laccase family protein, putative
LOC_Os12g15930Os.46012.1.S1_at1/1112+9080854..9081348hypothetical protein
LOC_Os12g15939NANA12+9082857..9083543NA
LOC_Os12g15950OsAffx.23366.2.S1_s_at1/1112+9085271..9088871transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15950Os.14765.1.S1_at1/1112+9085271..9088871transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15960OsAffx.19699.1.S1_at11/1112+9095141..9097127hypothetical protein
LOC_Os12g15960OsAffx.25317.1.S1_at1/1112+9095141..9097127hypothetical protein
LOC_Os12g15980Os.43203.1.S1_x_at5/1112+9101375..9104610hypothetical protein
LOC_Os12g15990OsAffx.22896.1.S1_x_at1/1112+9107283..9108870retrotransposon protein, putative, unclassified
LOC_Os12g16000OsAffx.9815.1.S1_at11/1112+9111404..9116943transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16010OsAffx.31756.4.S1_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.5037.1.S1_s_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.4.S1_x_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.52455.1.S1_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.5.S1_x_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19699.1.S1_at--1071--5231Chr12:9095171..9095195 (25 bp)
GAATCAGCCCATAACACCGAAGAAT
LOC_Os12g15960
OsAffx.19699.1.S1_at--828--8091Chr12:9095206..9095230 (25 bp)
GGACCATAAGAGGAGCCAGGCCAAA
LOC_Os12g15960
OsAffx.19699.1.S1_at--584--7551Chr12:9095245..9095774 (25 bp)
GGGCCAACCCAGTAATTGCTGCGTA
LOC_Os12g15960
OsAffx.19699.1.S1_at--141--9991Chr12:9096451..9096475 (25 bp)
TACCAGGACCATTTCTAGTGCCATT
LOC_Os12g15960
OsAffx.19699.1.S1_at--1011--1131Chr12:9096467..9096491 (25 bp)
AGTGCCATTGTTGGGATGCATGCCT
LOC_Os12g15960
OsAffx.19699.1.S1_at--315--6331Chr12:9096481..9096940 (25 bp)
GATGCATGCCTGGATCAATGGAAGA
LOC_Os12g15960
OsAffx.19699.1.S1_at--534--2171Chr12:9096979..9097003 (25 bp)
ACACGACAAGTGAAGCGCCGGCTAT
LOC_Os12g15960
OsAffx.19699.1.S1_at--896--4871Chr12:9096999..9097023 (25 bp)
GCTATTTTCCCTTATCCGTTACAAG
LOC_Os12g15960
OsAffx.19699.1.S1_at--347--1111Chr12:9097026..9097050 (25 bp)
AGTGTGATTCATGCACTTGCTGCAA
LOC_Os12g15960
OsAffx.19699.1.S1_at--787--5152Chr12:9097056..9097080 (25 bp)
GCAACTGCTTTGCATCGTCATGCTG
LOC_Os12g15960
OsAffx.19699.1.S1_at--304--7132Chr12:9097072..9097096 (25 bp)
GTCATGCTGCTACGAGTCAATATGT
LOC_Os12g15960
Target Sequence 
GAATCAGCCCATAACACCGAAGAATGGATAGAGGAGGACCATAAGAGGAGCCAGGCCAAAGGCCAGGCCAGGGGGGGCCA
ACCCAGTAATTGCTGCGTATCCCACAGTATGTTTGAGGTGAAATGCTACAATGGTATATCCGTGCGCTTGCGGATTCTTG
TAACCATATATATACCAGGACCATTTCTAGTGCCATTGTTGGGATGCATGCCTGGATCAATGGAAGAGAAGAGCATTCGG
AACATTGTTCCAATACAGTCCATGAACACGACAAGTGAAGCGCCGGCTATTTTCCCTTATCCGTTACAAGAGAGTGTGAT
TCATGCACTTGCTGCAAGGGAAGCAACTGCTTTGCATCGTCATGCTGCTACGAGTCAATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis