Browse Element(s) Details


OsAffx.19701.1.S1_s_at

Description tigr:9640.m01588
TID=OsAffx.19701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1628011/11expressed protein
LOC_Os11g135002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein
LOC_Os12g16290Os.12021.1.S1_at11/1112+9312637..9315528Isoflavone reductase homolog, putative, expressed
LOC_Os12g16300OsAffx.31763.1.S1_at11/1112+9319553..9319925hypothetical protein
LOC_Os12g16310OsAffx.26046.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310Os.52323.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310OsAffx.20940.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16320OsAffx.24242.2.S1_at3/1112+9330425..9332427hypothetical protein
LOC_Os12g16320Os.31929.11.S1_x_at1/1112+9330425..9332427hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19701.1.S1_s_at--1147--7131Chr12:9307753..9307777 (25 bp)
GTGCTTTTTCCACTCGCTACAAGTC
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--1120--9832Chr12:9307736..9307760 (25 bp)
TACAAGTCCGAGCAGCCAAGCACTT
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--619--5932Chr12:9307727..9307751 (25 bp)
GAGCAGCCAAGCACTTATCGCAAGA
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--121--3731Chr12:9303128..9303152 (25 bp)
CTACCGAGATGTCCACGTCAGAGTG
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--11--9951Chr12:9303102..9303126 (25 bp)
TACGAGCTCCAGATTAAGAAGAACA
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--689--2211Chr12:9303080..9303104 (25 bp)
ACAAGCTTTGTGACATGTTTGATGA
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--778--3391Chr12:9302229..9302253 (25 bp)
CAGCACCGGGTGATGGGTTTCCAAT
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--540--9811Chr12:9302110..9302226 (25 bp)
TAACATCCCTAACCACCTTATTTAT
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--84--6071Chr12:9302051..9302075 (25 bp)
GAGTTCTCCGCAAATGGACCATTTA
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--865--6671Chr12:9302018..9302042 (25 bp)
GTTGCTTATCAAAATCTAGGCCTCC
LOC_Os12g16280
OsAffx.19701.1.S1_s_at--322--2451Chr12:9302008..9302032 (25 bp)
AAAATCTAGGCCTCCTTGGTGATGA
LOC_Os12g16280
Target Sequence 
GTGCTTTTTCCACTCGCTACAAGTCCGAGCAGCCAAGCACTTATCGCAAGAATGATATGCATTGAAAATTACACATTTGC
TTGGCAGTTATACTTTGATGGGTTTTTCAACGAGGATAGTGTTACAGTAGGTGATCTGGTTGTGAAAGATCAGAAAATAG
CTATTGGAGATGAGGTCATTATAGCATTTGGAAGAATGGGAACCATGTTTCGGCAATCTACCGAGATGTCCACGTCAGAG
TGGTACGAGCTCCAGATTAAGAAGAACAAGCTTTGTGACATGTTTGATGAGTCGTCGTTTGGAACTACCCCATCTATACC
AGAGATGCCTGTCCACCGTTATGACAGGGACCTAAGCAAGAATAACTTCATGAGCTCACCAGCACCGGGTGATGGGTTTC
CAATAGTAACATCCCTAACCACCTTATTTATGAATAGAGATCAACTTACTGGAACAAACCATATTGAGTTCTCCGCAAAT
GGACCATTTAAATATCAAGTTGCTTATCAAAATCTAGGCCTCCTTGGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19701.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis