Browse Element(s) Details


OsAffx.19704.1.S1_at

Description tigr:9640.m01617
TID=OsAffx.19704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1653011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein
LOC_Os12g16520Os.54238.1.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16520OsAffx.18050.2.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16530OsAffx.19704.1.S1_at11/1112+9471444..9471847hypothetical protein
LOC_Os12g16540Os.52308.1.S1_at11/1112+9473783..9476226wall-associated kinase-like 1, putative, expressed
LOC_Os12g16550OsAffx.7613.1.S1_at11/1112+9477854..9478101hypothetical protein
LOC_Os12g16559Os.37711.3.S1_x_at1/1112+9480158..9480942NA
LOC_Os12g16570OsAffx.7614.1.S1_at11/1112+9484135..9484526hypothetical protein
LOC_Os12g16580NANA12+9486006..9487648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16590Os.52242.1.S1_at1/1112+9490817..9494174transposon protein, putative, Mariner sub-class
LOC_Os12g16600OsAffx.31660.1.S1_at9/1112+9494762..9496571hypothetical protein
LOC_Os12g16600OsAffx.31660.2.S1_x_at3/1112+9494762..9496571hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19704.1.S1_at--751--7731Chr12:9471661..9471795 (25 bp)
GGTGGTTGAGGCGAACCCATGCCAC
LOC_Os12g16530
OsAffx.19704.1.S1_at--442--5751Chr12:9471635..9471659 (25 bp)
GACGTCGGAGATTCCGCTCCATGTC
LOC_Os12g16530
OsAffx.19704.1.S1_at--613--4431Chr12:9471609..9471633 (25 bp)
GCCTATTGCGTTGCTCCGGGAAGAA
LOC_Os12g16530
OsAffx.19704.1.S1_at--915--5491Chr12:9471587..9471611 (25 bp)
GAACATGGAACCAGATATTGCCATA
LOC_Os12g16530
OsAffx.19704.1.S1_at--677--6511Chr12:9471574..9471598 (25 bp)
GATATTGCCATAGGTTCCTGGCCAG
LOC_Os12g16530
OsAffx.19704.1.S1_at--1086--10071Chr12:9471564..9471588 (25 bp)
TAGGTTCCTGGCCAGATTTCGCAGG
LOC_Os12g16530
OsAffx.19704.1.S1_at--144--1271Chr12:9471551..9471575 (25 bp)
AGATTTCGCAGGTCTGGGCTCACAC
LOC_Os12g16530
OsAffx.19704.1.S1_at--741--5011Chr12:9471544..9471568 (25 bp)
GCAGGTCTGGGCTCACACCTTCTAT
LOC_Os12g16530
OsAffx.19704.1.S1_at--257--1731Chr12:9471511..9471535 (25 bp)
ACCAGACCTCTGTCGAGGAGCTCAA
LOC_Os12g16530
OsAffx.19704.1.S1_at--290--971Chr12:9471496..9471520 (25 bp)
AGGAGCTCAACGGTGACTACAGCCC
LOC_Os12g16530
OsAffx.19704.1.S1_at--532--2571Chr12:9471488..9471512 (25 bp)
AACGGTGACTACAGCCCCTTGCGAC
LOC_Os12g16530
Target Sequence 
GGTGGTTGAGGCGAACCCATGCCACCGACGTCGGAGATTCCGCTCCATGTCCGCCTATTGCGTTGCTCCGGGAAGAACAT
GGAACCAGATATTGCCATAGGTTCCTGGCCAGATTTCGCAGGTCTGGGCTCACACCTTCTATCCCACGCCACCAGACCTC
TGTCGAGGAGCTCAACGGTGACTACAGCCCCTTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis