Browse Element(s) Details


OsAffx.19770.1.S1_at

Description tigr:9640.m02072
TID=OsAffx.19770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g219607/11hypothetical protein
LOC_Os07g340601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19770.1.S1_at--940--2071Chr12:12359544..12359741 (25 bp)
ACATACGTGAAGAGGGCATTAGAGC
LOC_Os12g21960
OsAffx.19770.1.S1_at--79--2791Chr12:12359535..12359558 (24 bp)
AAGAGGGCATTAGAGCACGGCTCGT
LOC_Os12g21960
OsAffx.19770.1.S1_at--337--7591Chr12:12359531..12359555 (25 bp)
GGGCATTAGAGCACGGCTCGTGAAC
LOC_Os12g21960
OsAffx.19770.1.S1_at--984--131Chr12:12359527..12359551 (25 bp)
ATTAGAGCACGGCTCGTGAACAAGG
LOC_Os12g21960
OsAffx.19770.1.S1_at--185--1511Chr12:12359522..12359546 (25 bp)
AGCACGGCTCGTGAACAAGGACATG
LOC_Os12g21960
OsAffx.19770.1.S1_at--910--2211Chr12:12359513..12359532 (20 bp)
ACAAGGACATGGCTCCATGGTACAA
LOC_Os12g21960
OsAffx.19770.1.S1_at--51--2131NONE
ACATGGCTCCATGGTACAAGCAGCA
NONE
OsAffx.19770.1.S1_at--31--871NONE
ATGGCTCCATGGTACAAGCAGCAAC
NONE
OsAffx.19770.1.S1_at--849--8311NONE
GGCTCCATGGTACAAGCAGCAACAG
NONE
OsAffx.19770.1.S1_at--625--3811NONE
CTCCATGGTACAAGCAGCAACAGCA
NONE
OsAffx.19770.1.S1_at--469--2472Chr07:20351568..20351592 (25 bp)
AACAGCAGCTATTTAAGCAGCAAAA
LOC_Os07g34060
Target Sequence 
ACATACGTGAAGAGGGCATTAGAGCACGGCTCGTGAACAAGGACATGGCTCCATGGTACAAGCAGCAACAGCAGCTATTT
AAGCAGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis