Browse Element(s) Details


OsAffx.19772.1.S1_at

Description tigr:9640.m02083
TID=OsAffx.19772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2206011/11expressed protein
LOC_Os11g151703/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein
LOC_Os12g22090OsAffx.19773.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.54513.1.S1_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090OsAffx.19773.1.S1_x_at11/1112+12422722..12430105expressed protein
LOC_Os12g22090Os.24326.1.A1_s_at11/1112+12422722..12430105expressed protein
LOC_Os12g22110OsAffx.7654.1.S1_at11/1112+12430802..12438237ABC-2 type transporter family protein
LOC_Os12g22120OsAffx.19774.1.S1_at10/1112+12439303..12440874ABC transporter AbcG18, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19772.1.S1_at--1020--2331Chr12:12414099..12414123 (25 bp)
AAAGCAGCGAGAGGCAGCGTCAGAT
LOC_Os12g22060
OsAffx.19772.1.S1_at--734--1151Chr12:12414044..12414068 (25 bp)
AGTCGATTCGGCACCTGGGACAGCT
LOC_Os12g22060
OsAffx.19772.1.S1_at--1115--8131Chr12:12414002..12414026 (25 bp)
GGACACCCGATGACGGCTCATGATA
LOC_Os12g22060
OsAffx.19772.1.S1_at--776--3731Chr12:12413986..12414010 (25 bp)
CTCATGATAGAGTGGCGCCGGGAAC
LOC_Os12g22060
OsAffx.19772.1.S1_at--1054--1871Chr12:12413596..12413945 (25 bp)
ACGATGGTTCCTTGGGCGCAACAGT
LOC_Os12g22060
OsAffx.19772.1.S1_at--811--1352Chr11:8539804..8539828 (25 bp)
AGAGAGGCGATGATCCCAGCGTGCA
LOC_Os11g15170
OsAffx.19772.1.S1_at--952--6372Chr11:8539815..8539839 (25 bp)
GATCCCAGCGTGCATGAGCAACAGA
LOC_Os11g15170
OsAffx.19772.1.S1_at--327--2592Chr11:8547836..8547860 (25 bp)
AACGATGACGTGCTTTGTGATATGC
LOC_Os11g15170
OsAffx.19772.1.S1_at--226--6451Chr12:12413072..12413096 (25 bp)
GATCACGTGCACACACAGGACGATA
LOC_Os12g22060
OsAffx.19772.1.S1_at--149--8812Chr12:12412705..12412729 (25 bp)
TGTTCCCTCCACAATAGCGAGCAGC
LOC_Os12g22060
OsAffx.19772.1.S1_at--381--6012Chr11:8548260..8548283 (24 bp)
GAGAGCTTCAATGCTGCAGCACGGC
NONE
Target Sequence 
AAAGCAGCGAGAGGCAGCGTCAGATGGTAGAGGTGAAGACGAAGGGGCTTTGCGGAGTCGATTCGGCACCTGGGACAGCT
GGTGGAGCTCTGTGCCGGGACACCCGATGACGGCTCATGATAGAGTGGCGCCGGGAACACGATGGTTCCTTGGGCGCAAC
AGTGTGGAGCAGAGAGGCGATGATCCCAGCGTGCATGAGCAACAGAAAAATATGGGACGTTGGTATATGCAAAGGAGGAC
AACGATGACGTGCTTTGTGATATGCAAATGGAATCACGATCACGTGCACACACAGGACGATAAATTGGGAAGAAAAAAAA
TGATGAAGGAGGTGGATGTAGGGCAGCCAGCAGAGAGGCGGCTTGCAGGCGTGATGGCAGCCGTCCTCCCTCAGGCTGCG
ACGATGGCACCGGCTCGAGGTACCGAGGCAGTGGTCTGTTCCCTCCACAATAGCGAGCAGCAACAACAGCAGGACAATGG
CGTACAAGCGAAGTGGGAGAGCTTCAATGCTGCAGCACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis