Browse Element(s) Details


OsAffx.19810.2.S1_at

Description tigr:9636.m02742
TID=OsAffx.19810.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2774011/11transposon protein, putative, unclassified
LOC_Os12g248705/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19810.2.S1_at--1066--6792Chr12:14257796..14257865 (25 bp)
GTTTTACACTACAAGGCTGGATGCA
LOC_Os12g24870
OsAffx.19810.2.S1_at--1155--10352Chr12:14257797..14257866 (25 bp)
TTTTACACTACAAGGCTGGATGCAG
LOC_Os12g24870
OsAffx.19810.2.S1_at--1139--10312Chr12:14257798..14257867 (25 bp)
TTTACACTACAAGGCTGGATGCAGA
LOC_Os12g24870
OsAffx.19810.2.S1_at--432--10492Chr12:14257799..14257868 (25 bp)
TTACACTACAAGGCTGGATGCAGAA
LOC_Os12g24870
OsAffx.19810.2.S1_at--979--9852Chr12:14257800..14257869 (25 bp)
TACACTACAAGGCTGGATGCAGAAA
LOC_Os12g24870
OsAffx.19810.2.S1_at--60--2751Chr08:16776394..16776418 (25 bp)
AAGAAGTCCCCGACATAATATATAA
LOC_Os08g27740
OsAffx.19810.2.S1_at--378--1411Chr08:16776395..16776419 (25 bp)
AGAAGTCCCCGACATAATATATAAT
LOC_Os08g27740
OsAffx.19810.2.S1_at--141--5331Chr08:16776396..16776420 (25 bp)
GAAGTCCCCGACATAATATATAATG
LOC_Os08g27740
OsAffx.19810.2.S1_at--26--2851Chr08:16776397..16776421 (25 bp)
AAGTCCCCGACATAATATATAATGT
LOC_Os08g27740
OsAffx.19810.2.S1_at--135--1151Chr08:16776398..16776422 (25 bp)
AGTCCCCGACATAATATATAATGTT
LOC_Os08g27740
OsAffx.19810.2.S1_at--124--7251Chr08:16776399..16776423 (25 bp)
GTCCCCGACATAATATATAATGTTA
LOC_Os08g27740
Target Sequence 
GTTTTACACTACAAGGCTGGATGCAGAAAAAACACAAGAAGTCCCCGACATAATATATAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19810.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis