Browse Element(s) Details


OsAffx.19823.1.S1_at

Description tigr:9640.m02450
TID=OsAffx.19823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2564011/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25600Os.24831.3.S1_s_at11/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.1.S1_x_at10/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.3.S1_x_at8/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25610NANA12+14819296..14820579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25630Os.8762.1.S1_at11/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25630Os.7414.1.S1_at1/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25640OsAffx.19823.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.9939.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.50043.1.A1_at1/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25650OsAffx.19824.1.S1_at10/1112+14844949..14846006hypothetical protein
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19823.1.S1_at--286--31Chr12:14837709..14837733 (25 bp)
ATTGGAATTTCGATCTCTGGTGACT
LOC_Os12g25640
OsAffx.19823.1.S1_at--344--451Chr12:14837697..14837721 (25 bp)
ATCTCTGGTGACTGGTAGCCTAGCG
LOC_Os12g25640
OsAffx.19823.1.S1_at--985--9971Chr12:14837682..14837706 (25 bp)
TAGCCTAGCGGTGGGTCATCAGGTA
LOC_Os12g25640
OsAffx.19823.1.S1_at--1073--7811Chr12:14837669..14837693 (25 bp)
GGTCATCAGGTAGAGCAGTTTGTTA
LOC_Os12g25640
OsAffx.19823.1.S1_at--578--7391Chr12:14837635..14837659 (25 bp)
GTGAGGGTGTTTGGCTTCATCAGAA
LOC_Os12g25640
OsAffx.19823.1.S1_at--196--5131Chr12:14837606..14837630 (25 bp)
GCACAATGTACTGTTGGCGACTGTT
LOC_Os12g25640
OsAffx.19823.1.S1_at--153--4611Chr12:14837590..14837614 (25 bp)
GCGACTGTTGCTGTGGTGCTGACCA
LOC_Os12g25640
OsAffx.19823.1.S1_at--13--5311Chr12:14837545..14837568 (24 bp)
GAAGGAACCCTCAGATTGTGGTGGT
LOC_Os12g25640
OsAffx.19823.1.S1_at--27--6611Chr12:14837145..14837555 (25 bp)
GATTGTGGTGGTTTCCTAGCGGAAT
LOC_Os12g25640
OsAffx.19823.1.S1_at--1114--2431Chr12:14837025..14837049 (25 bp)
AACAAGGCCTTAGATGGACTTGAGA
LOC_Os12g25640
OsAffx.19823.1.S1_at--639--7511Chr12:14836997..14837021 (25 bp)
GTGGATTTTGCTTAGAGGGTATACA
LOC_Os12g25640
Target Sequence 
ATTGGAATTTCGATCTCTGGTGACTGGTAGCCTAGCGGTGGGTCATCAGGTAGAGCAGTTTGTTATATGCTTGGGTGAGG
GTGTTTGGCTTCATCAGAAGCATGCACAATGTACTGTTGGCGACTGTTGCTGTGGTGCTGACCATTATGGTGTTGGAATT
AAAGGGAAGGAACCCTCAGATTGTGGTGGTTTCCTAGCGGAATCTGTAATTTGTTTTGTTATTAGATTACGTTTAATACT
TCAAATGTATATCCGTATATCCGATGTGACAACCAAACCCGAAAATATTCCCCAACTAAACAAGGCCTTAGATGGACTTG
AGAGGGGTGGATTTTGCTTAGAGGGTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis