Browse Element(s) Details


OsAffx.19878.1.S1_at

Description tigr:9640.m02781
TID=OsAffx.19878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2888011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28830OsAffx.21171.4.S1_x_at3/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.20729.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.10158.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.5.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.4.S1_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28840NANA12+17043737..17044306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28850OsAffx.22711.4.A1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.22927.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.20380.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28860OsAffx.31919.1.S1_at11/1112+17057083..17057523hypothetical protein
LOC_Os12g28870OsAffx.7730.1.S1_at11/1112+17058561..17059340hypothetical protein
LOC_Os12g28880OsAffx.19878.1.S1_at11/1112+17064756..17065274Protease inhibitor/seed storage/LTP family protein
LOC_Os12g28890Os.40360.1.S1_x_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.2358.1.S1_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890OsAffx.22548.1.S1_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.40855.5.S1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.45902.1.A1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28900Os.46012.2.S1_x_at7/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.27088.1.A1_x_at4/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.46012.3.S1_x_at3/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28910NANA12+17083524..17084039hypothetical protein
LOC_Os12g28920NANA12+17086205..17092927retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19878.1.S1_at--737--10711Chr12:17064787..17064811 (25 bp)
TTGCTGCCATCATTCTCCCATTCTT
LOC_Os12g28880
OsAffx.19878.1.S1_at--441--431Chr12:17064795..17064819 (25 bp)
ATCATTCTCCCATTCTTGTCATTCG
LOC_Os12g28880
OsAffx.19878.1.S1_at--562--111Chr12:17064806..17064830 (25 bp)
ATTCTTGTCATTCGCCGAAGCCCAA
LOC_Os12g28880
OsAffx.19878.1.S1_at--53--2931Chr12:17064881..17064905 (25 bp)
AAGGAGAGCACCGTCACCATCGGTG
LOC_Os12g28880
OsAffx.19878.1.S1_at--112--1371Chr12:17064885..17064909 (25 bp)
AGAGCACCGTCACCATCGGTGACTG
LOC_Os12g28880
OsAffx.19878.1.S1_at--854--1771Chr12:17064920..17064944 (25 bp)
ACCGGCACCGGTCATAGCACCATCA
LOC_Os12g28880
OsAffx.19878.1.S1_at--688--6951Chr12:17064957..17064981 (25 bp)
GTAGCACCTAGCCAGCCGCTAGTCG
LOC_Os12g28880
OsAffx.19878.1.S1_at--81--4231Chr12:17065150..17065174 (25 bp)
CCGCAGGTTGTCTATGTGAGGCTGT
LOC_Os12g28880
OsAffx.19878.1.S1_at--934--3471Chr12:17065153..17065177 (25 bp)
CAGGTTGTCTATGTGAGGCTGTGAA
LOC_Os12g28880
OsAffx.19878.1.S1_at--801--8331Chr12:17065169..17065193 (25 bp)
GGCTGTGAAGATTAACCTCGGTGTC
LOC_Os12g28880
OsAffx.19878.1.S1_at--934--8991Chr12:17065174..17065198 (25 bp)
TGAAGATTAACCTCGGTGTCACCGC
LOC_Os12g28880
Target Sequence 
TTGCTGCCATCATTCTCCCATTCTTGTCATTCGCCGAAGCCCAACAACCTCAAACTCCTCCAAGAAGAAATCCACCACGT
GCACCGCCATCACCAAGGAGAGCACCGTCACCATCGGTGACTGCAGAACCAACACCGGCACCGGTCATAGCACCATCACC
ACCACCAGTTGTAGCACCTAGCCAGCCGCTAGTCGTAGCACCCACACAGCCACCAACACCATCTGGTGGTAGTCAATGCC
TAAGAGAAAATGTAATTGCACTTAATGTATGCGGACAACTTGATTTGTCCACGTTGCTCAACAACCCGACTAAGGCTATG
CAAGACTGTTGTCCACCAATCAACAATCTCTCAAGCACCATTGCCGCAGGTTGTCTATGTGAGGCTGTGAAGATTAACCT
CGGTGTCACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis