Browse Element(s) Details


OsAffx.7730.1.S1_at

Description tigr:9640.m02780
TID=OsAffx.7730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28830OsAffx.21171.4.S1_x_at3/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.20729.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.10158.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.5.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.4.S1_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28840NANA12+17043737..17044306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28850OsAffx.22711.4.A1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.22927.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.20380.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28860OsAffx.31919.1.S1_at11/1112+17057083..17057523hypothetical protein
LOC_Os12g28870OsAffx.7730.1.S1_at11/1112+17058561..17059340hypothetical protein
LOC_Os12g28880OsAffx.19878.1.S1_at11/1112+17064756..17065274Protease inhibitor/seed storage/LTP family protein
LOC_Os12g28890Os.40360.1.S1_x_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.2358.1.S1_at3/1112+17073309..17076628hypothetical protein
LOC_Os12g28890OsAffx.22548.1.S1_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.40855.5.S1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28890Os.45902.1.A1_x_at2/1112+17073309..17076628hypothetical protein
LOC_Os12g28900Os.46012.2.S1_x_at7/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.27088.1.A1_x_at4/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28900Os.46012.3.S1_x_at3/1112+17078314..17080756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g28910NANA12+17083524..17084039hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7730.1.S1_at--1006--9371Chr12:17058760..17058784 (25 bp)
TCGAGGACCTCTACTCCCAGCAGGG
LOC_Os12g28870
OsAffx.7730.1.S1_at--170--7571Chr12:17058791..17058815 (25 bp)
GGGCGGCGAGCCGATCACAATGGCG
LOC_Os12g28870
OsAffx.7730.1.S1_at--119--3531Chr12:17058839..17058863 (25 bp)
CATCCGGAGGGAGCGTGCGAGGCAC
LOC_Os12g28870
OsAffx.7730.1.S1_at--683--8591Chr12:17059066..17059090 (25 bp)
TGGTCGAGTTCCTCGCGACGTTCCA
LOC_Os12g28870
OsAffx.7730.1.S1_at--1042--2111Chr12:17059117..17059141 (25 bp)
ACATGGAGGCGATGGGCCCCGAGCA
LOC_Os12g28870
OsAffx.7730.1.S1_at--425--2731Chr12:17059237..17059261 (25 bp)
AAGAAGAAGTCCAACTCGTCCGTGA
LOC_Os12g28870
OsAffx.7730.1.S1_at--443--1451Chr12:17059241..17059265 (25 bp)
AGAAGTCCAACTCGTCCGTGAAGCT
LOC_Os12g28870
OsAffx.7730.1.S1_at--337--9211Chr12:17059246..17059270 (25 bp)
TCCAACTCGTCCGTGAAGCTTGTCG
LOC_Os12g28870
OsAffx.7730.1.S1_at--34--10831Chr12:17059265..17059289 (25 bp)
TTGTCGCCGCGTTCTAAGTGATCTT
LOC_Os12g28870
OsAffx.7730.1.S1_at--28--4531Chr12:17059270..17059294 (25 bp)
GCCGCGTTCTAAGTGATCTTGTAGT
LOC_Os12g28870
OsAffx.7730.1.S1_at--1015--3731Chr12:17059278..17059302 (25 bp)
CTAAGTGATCTTGTAGTGCTCATTG
LOC_Os12g28870
Target Sequence 
TCGAGGACCTCTACTCCCAGCAGGGGAGGCCGGGCGGCGAGCCGATCACAATGGCGGCGGCGGCGTTCGCGCGCCACGGC
ATCCGGAGGGAGCGTGCGAGGCACGTGGCGAGGCTCCGGGCGGCCGCGTCGCTGCGGCTGTCCGTCGCCAGCGCCATCCG
CGGCCTCGCCGTCAGGTCCACCGCGACGCGGAGGTGCGTCAAGACGGCGCGCGGCCTGATCCGGCAGACGCAACGGCTGC
TCCCCGTCGGCGAGCGCGACCTCGACGGCGGCGGCGAGGCGACCACCACCGAGCGCGTGGTGACCGTGGTCGAGTTCCTC
GCGACGTTCCAGGGGATGGAGGCGGAGCTGGAGGCCGACATGGAGGCGATGGGCCCCGAGCACGAGCGCCTGCTCCGGCG
GCACGACGCCGCCGTGGGCGCGGAGCTTGCCGAGGCGGCGGCGTTGGAGGCTATCCCGGAGCTTCCTCCTGCCACCGAAG
AAGAAGTCCAACTCGTCCGTGAAGCTTGTCGCCGCGTTCTAAGTGATCTTGTAGTGCTCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis