Browse Element(s) Details


OsAffx.1990.1.S1_at

Description tigr:9629.m01214
TID=OsAffx.1990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1251011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein
LOC_Os01g12500NANA1+6860123..6860549hypothetical protein
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1990.1.S1_at--1102--8871Chr01:6872847..6872871 (25 bp)
TGATGGAGCCCTGCGAAGTTGGCAA
LOC_Os01g12510
OsAffx.1990.1.S1_at--385--3251Chr01:6872825..6872849 (25 bp)
CAAGCCCGTAGAGGGCAGTTGGCTC
LOC_Os01g12510
OsAffx.1990.1.S1_at--680--3431Chr01:6872810..6872834 (25 bp)
CAGTTGGCTCCGGAGGCCTCGGAAC
LOC_Os01g12510
OsAffx.1990.1.S1_at--834--671Chr01:6872797..6872821 (25 bp)
AGGCCTCGGAACCAACTGAAGGGCT
LOC_Os01g12510
OsAffx.1990.1.S1_at--531--3251Chr01:6872785..6872809 (25 bp)
CAACTGAAGGGCTCCGAGGGTCTCG
LOC_Os01g12510
OsAffx.1990.1.S1_at--805--4031Chr01:6872771..6872795 (25 bp)
CGAGGGTCTCGAAGCCCAGTCAAGG
LOC_Os01g12510
OsAffx.1990.1.S1_at--880--5371Chr01:6872761..6872785 (25 bp)
GAAGCCCAGTCAAGGGACCCAGAGA
LOC_Os01g12510
OsAffx.1990.1.S1_at--761--9711Chr01:6872752..6872776 (25 bp)
TCAAGGGACCCAGAGACCCCGGAGT
LOC_Os01g12510
OsAffx.1990.1.S1_at--72--3371Chr01:6872742..6872766 (25 bp)
CAGAGACCCCGGAGTCGGAGCCTAG
LOC_Os01g12510
OsAffx.1990.1.S1_at--135--9451Chr01:6872728..6872752 (25 bp)
TCGGAGCCTAGGATGGCCTCCAGAA
LOC_Os01g12510
OsAffx.1990.1.S1_at--308--4291Chr01:6872722..6872746 (25 bp)
CCTAGGATGGCCTCCAGAAGTGGGC
LOC_Os01g12510
Target Sequence 
TGATGGAGCCCTGCGAAGTTGGCAAGCCCGTAGAGGGCAGTTGGCTCCGGAGGCCTCGGAACCAACTGAAGGGCTCCGAG
GGTCTCGAAGCCCAGTCAAGGGACCCAGAGACCCCGGAGTCGGAGCCTAGGATGGCCTCCAGAAGTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis