Browse Element(s) Details


OsAffx.19902.1.S1_at

Description tigr:9640.m02954
TID=OsAffx.19902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19902.1.S1_at--455--1831Chr12:18328509..18328533 (25 bp)
ACGCGAGCCAAGAAGGTGCCGCCCT
LOC_Os12g30560
OsAffx.19902.1.S1_at--1091--5851Chr12:18328505..18328529 (25 bp)
GAGCCAAGAAGGTGCCGCCCTCCAT
LOC_Os12g30560
OsAffx.19902.1.S1_at--1121--4491Chr12:18328479..18328503 (25 bp)
GCCGTCACACCCGAGAAGGAGATGG
LOC_Os12g30560
OsAffx.19902.1.S1_at--375--8471Chr12:18328441..18328465 (25 bp)
TGGCGGCAGTACTGAGGGCGAGGAT
LOC_Os12g30560
OsAffx.19902.1.S1_at--100--6251Chr12:18328419..18328443 (25 bp)
GATGCGGTTGGTGCAGGACCCCACA
LOC_Os12g30560
OsAffx.19902.1.S1_at--1132--9131Chr12:18328417..18328441 (25 bp)
TGCGGTTGGTGCAGGACCCCACAGC
LOC_Os12g30560
OsAffx.19902.1.S1_at--975--7791Chr12:18328371..18328395 (25 bp)
GGTCTCCTACAACAAGACGCTCGTG
LOC_Os12g30560
OsAffx.19902.1.S1_at--678--9851Chr12:18328364..18328388 (25 bp)
TACAACAAGACGCTCGTGCCTGCCG
LOC_Os12g30560
OsAffx.19902.1.S1_at--10--1891Chr12:18328257..18328281 (25 bp)
ACGATCGAGACTCTCGTCGCTGGCA
LOC_Os12g30560
OsAffx.19902.1.S1_at--947--4791Chr12:18328123..18328147 (25 bp)
GCTCCGCGCTCCCTGAGAAGAGAGA
LOC_Os12g30560
OsAffx.19902.1.S1_at--21--9311Chr12:18328121..18328145 (25 bp)
TCCGCGCTCCCTGAGAAGAGAGAGA
LOC_Os12g30560
Target Sequence 
ACGCGAGCCAAGAAGGTGCCGCCCTCCATCGCCGTCACACCCGAGAAGGAGATGGAGTTCAACGGCGGTGGCGGCAGTAC
TGAGGGCGAGGATGCGGTTGGTGCAGGACCCCACAGCGGCGCCGACCACCACGCCACCGGTCTCCTACAACAAGACGCTC
GTGCCTGCCGCCACACCGACCACCCCCGCCACCCCGGCCCCCGCTGCGGCGCCCACCACCCCGGCTCTGGCCACCGCAGC
GCCTCCTCTCCCACGATCGAGACTCTCGTCGCTGGCACCGTTGTCCACCATCTTGGGGATCCCCGTCACGGTGCACGCCG
AGCCGCCACCGCCGGAGCTCGGACAGCCCGCCTCGCTCGCCTGCTCCGCCGCCCACCTGCCCGTCCGCTCCGCGCTCCCT
GAGAAGAGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis