Browse Element(s) Details


OsAffx.20057.1.S1_at

Description tigr:9640.m03984
TID=OsAffx.20057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g407309/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g143501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40690NANA12+25152937..25158833retrotransposon protein, putative, unclassified
LOC_Os12g40700Os.46306.1.S1_x_at6/1112+25160060..25164527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40710OsAffx.7844.1.S1_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40710OsAffx.7844.1.S1_x_at10/1112+25168554..25170761Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40720OsAffx.32123.1.S1_at11/1112+25173956..25177221hypothetical protein
LOC_Os12g40720OsAffx.28164.2.S1_at1/1112+25173956..25177221hypothetical protein
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20057.1.S1_at--320--2351Chr12:25182972..25182996 (25 bp)
AAAGCAAGCAAGCATCACCACGCGG
LOC_Os12g40730
OsAffx.20057.1.S1_at--1058--3231Chr12:25182964..25182988 (25 bp)
CAAGCATCACCACGCGGCTGCAGGA
LOC_Os12g40730
OsAffx.20057.1.S1_at--52--8631Chr12:25182917..25182941 (25 bp)
TGGGGATTCGATCGATGAACTCTTC
LOC_Os12g40730
OsAffx.20057.1.S1_at--647--5471Chr12:25182905..25182925 (21 bp)
GAACTCTTCACTAAATTTCATAGGC
LOC_Os12g40730
OsAffx.20057.1.S1_at--867--3732Chr11:8055114..8055443 (25 bp)
CTAAATTTCATAGGCGGAGGTTCAA
LOC_Os11g14350
OsAffx.20057.1.S1_at--329--7151Chr12:25182753..25182775 (23 bp)
GTCTCGTCCCCGGATGCGATAAGTC
LOC_Os12g40730
OsAffx.20057.1.S1_at--804--6331NONE
GATGCGATAAGTCCAACCAGGCGTC
NONE
OsAffx.20057.1.S1_at--716--9131NONE
TGCGATAAGTCCAACCAGGCGTCGA
NONE
OsAffx.20057.1.S1_at--34--7111Chr12:25181692..25181716 (25 bp)
GTCACGATGCCGATGCATCCAGGGA
LOC_Os12g40730
OsAffx.20057.1.S1_at--826--6351Chr12:25181687..25181711 (25 bp)
GATGCCGATGCATCCAGGGATGGTT
LOC_Os12g40730
OsAffx.20057.1.S1_at--438--4631Chr12:25181617..25181641 (25 bp)
GCGATGGTGCCATTCGGAGCTATGC
LOC_Os12g40730
Target Sequence 
AAAGCAAGCAAGCATCACCACGCGGCTGCAGGAGCTCACAACCTTACAGAAAAAGTGGGGATTCGATCGATGAACTCTTC
ACTAAATTTCATAGGCGGAGGTTCAAGATAACTGAGAGGTTCAGGACGCTGCAGCGTCTCGTCCCCGGATGCGATAAGTC
CAACCAGGCGTCGACGCTGGACCAGACAATCCAGTACATGAAGTCGCTGCAGCACCAGCTCAAGGCCATGTCCGTCGTCG
GCTCGCCGCCGGCGCTGCTGTACCCCGCCGCCGTGCACCCGCAGTCGTACATGCATCCACCGCCACCGCCGCCGCCGGTC
ACGATGCCGATGCATCCAGGGATGGTTCTTGCTGCTCCTCCTCCAGGGGCGGCGCCGCCGCCCGGCCCTCCGGCGATGGT
GCCATTCGGAGCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis