Browse Element(s) Details


OsAffx.20185.1.S1_at

Description tigr:9638.m03410
TID=OsAffx.20185.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3799010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20185.1.S1_at--672--2111Chr10:20024955..20024979 (25 bp)
ACATGTCGCAAAGCCGCTTTCGCGT
LOC_Os10g37990
OsAffx.20185.1.S1_at--956--3271Chr10:20024947..20024971 (25 bp)
CAAAGCCGCTTTCGCGTTAGTGCGC
LOC_Os10g37990
OsAffx.20185.1.S1_at--496--7291NONE
GTGCGCGACGAGGTTCATGGATTAC
NONE
OsAffx.20185.1.S1_at--704--7931Chr10:20023572..20023596 (25 bp)
GGATTACCCATACCAAAATCTATTG
LOC_Os10g37990
OsAffx.20185.1.S1_at--155--2451Chr10:20023558..20023582 (25 bp)
AAAATCTATTGAACATGTGCTGAAG
LOC_Os10g37990
OsAffx.20185.1.S1_at--1032--991Chr10:20023363..20023559 (25 bp)
AGGATTGTACATATCGGCGTCAGCT
LOC_Os10g37990
OsAffx.20185.1.S1_at--176--2091Chr10:20023355..20023551 (25 bp)
ACATATCGGCGTCAGCTGTTGTATC
LOC_Os10g37990
OsAffx.20185.1.S1_at--402--491Chr10:20023351..20023372 (22 bp)
ATCGGCGTCAGCTGTTGTATCTTGC
LOC_Os10g37990
OsAffx.20185.1.S1_at--668--1611Chr10:20023342..20023366 (25 bp)
AGCTGTTGTATCTTGCTGCCATCCG
LOC_Os10g37990
OsAffx.20185.1.S1_at--189--10171Chr10:20023334..20023358 (25 bp)
TATCTTGCTGCCATCCGTCGAGTGG
LOC_Os10g37990
OsAffx.20185.1.S1_at--1005--9371Chr10:20023317..20023341 (25 bp)
TCGAGTGGCCCGATGCCCCAAGCTG
LOC_Os10g37990
Target Sequence 
ACATGTCGCAAAGCCGCTTTCGCGTTAGTGCGCGACGAGGTTCATGGATTACCCATACCAAAATCTATTGAACATGTGCT
GAAGGATTGTACATATCGGCGTCAGCTGTTGTATCTTGCTGCCATCCGTCGAGTGGCCCGATGCCCCAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis