Browse Element(s) Details


OsAffx.20193.1.S1_at

Description gb:NM_197387.1
DB_XREF= gi:37536133
TID=OsAffx.20193.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3757011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20193.1.S1_at--423--7131Chr10:19779930..19779954 (25 bp)
GTCATCCCGCTCGAGCAATTAATCG
LOC_Os10g37570
OsAffx.20193.1.S1_at--521--9371Chr10:19779940..19779964 (25 bp)
TCGAGCAATTAATCGACGACGACGA
LOC_Os10g37570
OsAffx.20193.1.S1_at--43--2171Chr10:19779985..19780009 (25 bp)
ACACCGGCAGGAGAGTCGTCGAGAC
LOC_Os10g37570
OsAffx.20193.1.S1_at--766--5991Chr10:19780005..19780029 (25 bp)
GAGACCCACCTCGTGGAGTGCGACG
LOC_Os10g37570
OsAffx.20193.1.S1_at--938--2611Chr10:19780059..19780083 (25 bp)
AACCTGGAGCGCAACCCAGAGGACA
LOC_Os10g37570
OsAffx.20193.1.S1_at--296--1331Chr10:19780076..19780100 (25 bp)
AGAGGACACCACAATCTTCGGCGAC
LOC_Os10g37570
OsAffx.20193.1.S1_at--1005--971Chr10:19780276..19780300 (25 bp)
AGGAGTTCCCGTCGTGCCGAGCCAA
LOC_Os10g37570
OsAffx.20193.1.S1_at--1014--7191Chr10:19780286..19780310 (25 bp)
GTCGTGCCGAGCCAACTGCGTCTAC
LOC_Os10g37570
OsAffx.20193.1.S1_at--156--7751Chr10:19780349..19780373 (25 bp)
GGTGTTCGACATGAACGCGGACGAA
LOC_Os10g37570
OsAffx.20193.1.S1_at--646--6191Chr10:19780406..19780430 (25 bp)
GAGGAACTATGCTCGCCGTGATGAG
LOC_Os10g37570
OsAffx.20193.1.S1_at--961--611Chr10:19780414..19780438 (25 bp)
ATGCTCGCCGTGATGAGACCATTTT
LOC_Os10g37570
Target Sequence 
GTCATCCCGCTCGAGCAATTAATCGACGACGACGACGGCGGCGGCGAGAACGTCGACACCGGCAGGAGAGTCGTCGAGAC
CCACCTCGTGGAGTGCGACGGCGAGCTGCTGCTCGTGTCGGTGCACGACAACCTGGAGCGCAACCCAGAGGACACCACAA
TCTTCGGCGACGACGACGACCACGACGGTAGCAGCAGCAGCAGCAGCGACAGCGGCGACGGGCGCGTGGTCGAGGTGCTC
AGGGTGGAGTGGGTGGCCGGCGGCGCGGTGCGGCTGGTGCGGCAGGAGGACCTCCGTTCCCGCGCCCTCTTCCTCGGCCG
GAACCACGCGTTCGCGCTCTCGCCGGAGGAGTTCCCGTCGTGCCGAGCCAACTGCGTCTACCTCGTCGACCAGCAGGGCC
ACCCCGACGGACGCGTCAGGGTGTTCGACATGAACGCGGACGAACGGTGGGAGCCCGAGGAGGCGGCCGTCGTAGCGAGG
AACTATGCTCGCCGTGATGAGACCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis