Browse Element(s) Details


OsAffx.20312.3.S1_at

Description tigr:9638.m02552
TID=OsAffx.20312.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g298207/11SnRNP protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20312.3.S1_at--1018--3831Chr10:15171719..15171743 (25 bp)
CTGCTTAGAAATATTAAGTAGCCAT
LOC_Os10g29820
OsAffx.20312.3.S1_at--682--4311Chr10:15171604..15171627 (24 bp)
CCTTAGCAGTATTGTCCGCGATTGC
LOC_Os10g29820
OsAffx.20312.3.S1_at--1160--10431Chr10:15171604..15171625 (22 bp)
TTAGCAGTATTGTCCGCGATTGCAG
LOC_Os10g29820
OsAffx.20312.3.S1_at--642--10011Chr10:15171604..15171624 (21 bp)
TAGCAGTATTGTCCGCGATTGCAGC
LOC_Os10g29820
OsAffx.20312.3.S1_at--57--1211NONE
AGTATTGTCCGCGATTGCAGCAAGA
NONE
OsAffx.20312.3.S1_at--702--6871NONE
GTATTGTCCGCGATTGCAGCAAGAG
NONE
OsAffx.20312.3.S1_at--599--10231NONE
TATTGTCCGCGATTGCAGCAAGAGG
NONE
OsAffx.20312.3.S1_at--849--10811NONE
TTGTCCGCGATTGCAGCAAGAGGCA
NONE
OsAffx.20312.3.S1_at--421--972Chr10:15161148..15161167 (20 bp)
AGGAGAGTGTGGGTGCGACGGCCGA
NONE
OsAffx.20312.3.S1_at--296--3011Chr10:15170890..15170914 (25 bp)
AATGCAGAGAACATGCAAGTTGCAA
LOC_Os10g29820
OsAffx.20312.3.S1_at--406--9051Chr10:15170888..15170912 (25 bp)
TGCAGAGAACATGCAAGTTGCAAGG
LOC_Os10g29820
Target Sequence 
CTGCTTAGAAATATTAAGTAGCCATATTGATGCCAACTCCGTGGCAACCATCTTGGTGCTAGCTGAGAAGCACTATTGCT
ATGGTCTCAAGGAGGCATGCTTTGAGTTCCTTAACTCCTTAGCAGTATTGTCCGCGATTGCAGCAAGAGGCAAGGAGAGT
GTGGGTGCGACGGCCGACGCCGGGGTGCGGGGGAATGCAGAGAACATGCAAGTTGCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20312.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis