Browse Element(s) Details


OsAffx.20312.4.S1_at

Description tigr:9638.m02549
TID=OsAffx.20312.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2979011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20312.4.S1_at--83--10111Chr10:15157519..15157543 (25 bp)
TATGGAGGCGCAAGTATTCAGGGCT
LOC_Os10g29790
OsAffx.20312.4.S1_at--828--831Chr10:15157520..15157544 (25 bp)
ATGGAGGCGCAAGTATTCAGGGCTT
LOC_Os10g29790
OsAffx.20312.4.S1_at--446--8551Chr10:15157521..15157545 (25 bp)
TGGAGGCGCAAGTATTCAGGGCTTT
LOC_Os10g29790
OsAffx.20312.4.S1_at--940--7991Chr10:15157522..15157546 (25 bp)
GGAGGCGCAAGTATTCAGGGCTTTA
LOC_Os10g29790
OsAffx.20312.4.S1_at--878--6211Chr10:15157523..15157547 (25 bp)
GAGGCGCAAGTATTCAGGGCTTTAC
LOC_Os10g29790
OsAffx.20312.4.S1_at--822--891Chr10:15157524..15157548 (25 bp)
AGGCGCAAGTATTCAGGGCTTTACT
LOC_Os10g29790
OsAffx.20312.4.S1_at--859--8371Chr10:15157525..15157549 (25 bp)
GGCGCAAGTATTCAGGGCTTTACTT
LOC_Os10g29790
OsAffx.20312.4.S1_at--240--4591Chr10:15157526..15157550 (25 bp)
GCGCAAGTATTCAGGGCTTTACTTA
LOC_Os10g29790
OsAffx.20312.4.S1_at--538--4111Chr10:15157527..15157551 (25 bp)
CGCAAGTATTCAGGGCTTTACTTAA
LOC_Os10g29790
OsAffx.20312.4.S1_at--361--10211Chr10:15157533..15157557 (25 bp)
TATTCAGGGCTTTACTTAAGTTTAT
LOC_Os10g29790
OsAffx.20312.4.S1_at--1017--3831Chr10:15157663..15157687 (25 bp)
CTGTGTAGAAATATTAAGTAACCAT
LOC_Os10g29790
Target Sequence 
TATGGAGGCGCAAGTATTCAGGGCTTTACTTAAGTTTATCTACACAGACATGTTGCCGGAGATGGATCAAGAAGATGAGA
CCGCAATGGTTCAACATCTACTTGTTGCAGCGGATAAGTATGGCTTGCATAGGCTGAAGATGATCTGTGTAGAAATATTA
AGTAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20312.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis