Browse Element(s) Details


OsAffx.20312.4.S1_x_at

Description tigr:9638.m02549
TID=OsAffx.20312.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2979011/11BTB/POZ domain containing protein
LOC_Os10g299505/11BTB/POZ domain containing protein
LOC_Os10g298101/11BTB/POZ domain containing protein
LOC_Os10g299201/11BTB/POZ domain containing protein
LOC_Os10g298201/11SnRNP protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20312.4.S1_x_at--412--9952Chr10:15157373..15157397 (25 bp)
TACGCCACCGATGTTGAGTTCCTAG
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--723--6055Chr10:15157388..15157412 (25 bp)
GAGTTCCTAGTTGGCGGCGAGACCT
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--503--3351Chr10:15157440..15157464 (25 bp)
CACGATCACCTGTCTTCATGGTGGA
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--308--9632Chr10:15157455..15157479 (25 bp)
TCATGGTGGAGCTTTTTGGGCCGAT
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--879--6211Chr10:15157523..15157547 (25 bp)
GAGGCGCAAGTATTCAGGGCTTTAC
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--1035--10152Chr10:15157555..15157579 (25 bp)
TATCTACACAGACATGTTGCCGGAG
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--871--2492Chr10:15157611..15157635 (25 bp)
AACATCTACTTGTTGCAGCGGATAA
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--143--5172Chr10:15157706..15157730 (25 bp)
GCAACCATCTTGGTGCTAGCTGAGA
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--921--1111Chr10:15157811..15157835 (25 bp)
AGTGACTTTCTGTATTTGATCCAAA
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--452--8852Chr10:15157827..15157851 (25 bp)
TGATCCAAAGCTGCCCTGATGTTTT
LOC_Os10g29790
OsAffx.20312.4.S1_x_at--967--10491Chr10:15157865..15157889 (25 bp)
TTCAACATCGTTGCTCGTCAATTGG
LOC_Os10g29790
Target Sequence 
TACGCCACCGATGTTGAGTTCCTAGTTGGCGGCGAGACCTTCACCGCGCATCGATTGGTGCTCGCAGCACGATCACCTGT
CTTCATGGTGGAGCTTTTTGGGCCGATGAAGGAGGGTACTACTGTAAACAAGATACATATATTTGATATGGAGGCGCAAG
TATTCAGGGCTTTACTTAAGTTTATCTACACAGACATGTTGCCGGAGATGGATCAAGAAGATGAGACCGCAATGGTTCAA
CATCTACTTGTTGCAGCGGATAAGTATGGCTTGCATAGGCTGAAGATGATCTGTGTAGAAATATTAAGTAACCATATTGA
TGCCTACTCCGTGGCAACCATCTTGGTGCTAGCTGAGAAGCACTATTGCTATGGTCTCAAGGAGGCATGCTTTGAGTTCC
TTAACTCCTCAGCAATATTGTCCGCGATTGTAAATACAAGTGACTTTCTGTATTTGATCCAAAGCTGCCCTGATGTTTTG
GAGGACATAAGTTTCAACATCGTTGCTCGTCAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20312.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis