Browse Element(s) Details


OsAffx.20314.1.S1_at

Description gb:NM_196643.1
DB_XREF= gi:37534645
TID=OsAffx.20314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012D19.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2976010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20314.1.S1_at--846--4191Chr10:15144226..15144250 (25 bp)
CCCTGGCGAGGTCAGCAGAGGCGAA
LOC_Os10g29760
OsAffx.20314.1.S1_at--147--4351Chr10:15144194..15144218 (25 bp)
CCAGGCAGCGAGGTTCATGAGGGAA
LOC_Os10g29760
OsAffx.20314.1.S1_at--284--3571Chr10:15144149..15144173 (25 bp)
CATAGGAGAGACCATCAGTGACGAA
LOC_Os10g29760
OsAffx.20314.1.S1_at--1005--391Chr10:15144136..15144160 (25 bp)
ATCAGTGACGAAGCCGGTGTTGACA
LOC_Os10g29760
OsAffx.20314.1.S1_at--285--2671Chr10:15144126..15144150 (25 bp)
AAGCCGGTGTTGACAAGGTCCGCAA
LOC_Os10g29760
OsAffx.20314.1.S1_at--299--3951Chr10:15144048..15144072 (25 bp)
CGGAGGTGGTGGTCATTGCCAACAC
LOC_Os10g29760
OsAffx.20314.1.S1_at--804--7491Chr10:15144043..15144067 (25 bp)
GTGGTGGTCATTGCCAACACGGTTG
LOC_Os10g29760
OsAffx.20314.1.S1_at--666--3271NONE
CAACACGGTTGGAGATGCAATCACT
NONE
OsAffx.20314.1.S1_at--462--6031Chr10:15143328..15143351 (24 bp)
GAGATGCAATCACTACTTGCCTCTT
LOC_Os10g29760
OsAffx.20314.1.S1_at--1065--10571Chr10:15143305..15143329 (25 bp)
TTCTCGCCTACTTGTCATGACAGTA
LOC_Os10g29760
OsAffx.20314.1.S1_at--316--4451Chr10:15143300..15143324 (25 bp)
GCCTACTTGTCATGACAGTAATCTC
LOC_Os10g29760
Target Sequence 
CCCTGGCGAGGTCAGCAGAGGCGAAAGGGGCACCAGGCAGCGAGGTTCATGAGGGAAGAGCCGGCTGGCGGCGCGGTCAT
AGGAGAGACCATCAGTGACGAAGCCGGTGTTGACAAGGTCCGCAAGGAAGGCGGCGGATCCAGGTGGAGACGGCGGGAAA
GAGGCGAGCAGCACCGCACGGAGGTGGTGGTCATTGCCAACACGGTTGGAGATGCAATCACTACTTGCCTCTTCTCGCCT
ACTTGTCATGACAGTAATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis