Browse Element(s) Details


OsAffx.20315.1.S1_at

Description tigr:9638.m02545
TID=OsAffx.20315.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2974011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20315.1.S1_at--522--891Chr10:15136152..15136176 (25 bp)
AGGCCGCAGCTCATATGTGCGCCGT
LOC_Os10g29740
OsAffx.20315.1.S1_at--183--1913Chr10:15136280..15136304 (25 bp)
ACGTCGTACGTGTGATCGATGCTGA
LOC_Os10g29740
OsAffx.20315.1.S1_at--368--9512Chr10:15136331..15136355 (25 bp)
TCTCGATCGAGGTGGCACGGCATAC
LOC_Os10g29740
OsAffx.20315.1.S1_at--139--8913Chr10:15136365..15136389 (25 bp)
TGAGATCGTCGGCTTGAGACGCCAT
LOC_Os10g29740
OsAffx.20315.1.S1_at--952--5993Chr10:15136380..15136404 (25 bp)
GAGACGCCATGTATGCTGCCGCTCA
LOC_Os10g29740
OsAffx.20315.1.S1_at--428--3793Chr10:15136437..15136461 (25 bp)
CTCGAGGGCGCGTACGACGTATTAC
LOC_Os10g29740
OsAffx.20315.1.S1_at--697--10152Chr10:15136456..15136480 (25 bp)
TATTACGACGTACGCGCCGACAAAT
LOC_Os10g29740
OsAffx.20315.1.S1_at--803--4512Chr10:15136471..15136495 (25 bp)
GCCGACAAATTTACGTACGCGCGCG
LOC_Os10g29740
OsAffx.20315.1.S1_at--391--7111Chr10:15136620..15136644 (25 bp)
GTCACCATATGTACGCGGGCAGAAG
LOC_Os10g29740
OsAffx.20315.1.S1_at--79--8273Chr10:15136637..15136661 (25 bp)
GGCAGAAGTCTCGTCGACTCGTTGC
LOC_Os10g29740
OsAffx.20315.1.S1_at--656--5713Chr10:15136652..15136676 (25 bp)
GACTCGTTGCTGTCCGCGGTGGAAA
LOC_Os10g29740
Target Sequence 
AGGCCGCAGCTCATATGTGCGCCGTGCTCCGGCCTCATCGTCCTATGCTGGCTGCTGCTGCTACGATGCCACCGGCCAGC
GGAACGCGTTGGCGTTCTGGAAGGTGCGGTTCGATCGGGCGCGAGGACACGTCGTACGTGTGATCGATGCTGATCACGGC
AGTGGGCGCGACGGTTGGTTCTCGATCGAGGTGGCACGGCATACGGTCAAGGATGAGATCGTCGGCTTGAGACGCCATGT
ATGCTGCCGCTCACCCCTCGTCGGCTCCGCTGGCTGGCCGCGTACCTCGAGGGCGCGTACGACGTATTACGACGTACGCG
CCGACAAATTTACGTACGCGCGCGCGAGCGACACAAGCCCCACGGCGAGGCAGCTGCACGCACTGCCTCCCGCCAATCGG
CGCACAGGGCCTCGCACCGACGACGAAGAACGTCGACGGCCAGGGCACCATGCACCGACGCGTACTGCGTCACCATATGT
ACGCGGGCAGAAGTCTCGTCGACTCGTTGCTGTCCGCGGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis