Browse Element(s) Details


OsAffx.20394.3.S1_at

Description tigr:9638.m02094
TID=OsAffx.20394.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2489011/11hypothetical protein
LOC_Os10g248702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein
LOC_Os10g24860OsAffx.18385.1.S1_at11/1110+12454207..12454743hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_at11/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_s_at9/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.3.S1_at2/1110+12455141..12456691hypothetical protein
LOC_Os10g24880NANA10+12458760..12459299hypothetical protein
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein
LOC_Os10g24900Os.46545.2.S1_x_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24900Os.46545.1.S1_at11/1110+12484345..12487465Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20394.3.S1_at--371--5752Chr10:12463148..12463172 (25 bp)
GACGGACCAGATCGTTCGCCTCTGT
LOC_Os10g24890
OsAffx.20394.3.S1_at--333--1272Chr10:12463140..12463164 (25 bp)
AGATCGTTCGCCTCTGTTTTGTACC
LOC_Os10g24890
OsAffx.20394.3.S1_at--163--9471Chr10:12463128..12463152 (25 bp)
TCTGTTTTGTACCTGCGACACCGGG
LOC_Os10g24890
OsAffx.20394.3.S1_at--644--8131Chr10:12463104..12463128 (25 bp)
GGACATCGGGACACGTGCCGTTCTC
LOC_Os10g24890
OsAffx.20394.3.S1_at--509--7291Chr10:12463090..12463114 (25 bp)
GTGCCGTTCTCGAATTGGCTGGATT
LOC_Os10g24890
OsAffx.20394.3.S1_at--1150--10851Chr10:12463076..12463100 (25 bp)
TTGGCTGGATTTTCAAATTCATTGT
LOC_Os10g24890
OsAffx.20394.3.S1_at--494--10511Chr10:12463026..12463050 (25 bp)
TTCAAACGCGGCCAAAAGGTGCTTC
LOC_Os10g24890
OsAffx.20394.3.S1_at--163--5971Chr10:12462737..12462761 (25 bp)
GAGAACGTTGGTCACAAATCCTCTG
LOC_Os10g24890
OsAffx.20394.3.S1_at--140--10851Chr10:12462730..12462754 (25 bp)
TTGGTCACAAATCCTCTGGCACAAA
LOC_Os10g24890
OsAffx.20394.3.S1_at--270--3911Chr10:12462715..12462739 (25 bp)
CTGGCACAAAGGAAGCCGATCAAAA
LOC_Os10g24890
OsAffx.20394.3.S1_at--590--5371Chr10:12462704..12462728 (25 bp)
GAAGCCGATCAAAAAGCAAACCAAG
LOC_Os10g24890
Target Sequence 
GACGGACCAGATCGTTCGCCTCTGTTTTGTACCTGCGACACCGGGGACATCGGGACACGTGCCGTTCTCGAATTGGCTGG
ATTTTCAAATTCATTGTTTGAAAAATCAAAAACTGAATCAAGTTCAAACGCGGCCAAAAGGTGCTTCAGGGTCTTCAACG
GAAAACCCGAGAACGTTGGTCACAAATCCTCTGGCACAAAGGAAGCCGATCAAAAAGCAAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20394.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis