Browse Element(s) Details


OsAffx.20501.1.S1_at

Description gb:NM_188115.1
DB_XREF= gi:34903313
TID=OsAffx.20501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g171103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g026901/11expressed protein
LOC_Os07g466401/11Glycosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17070Os.50.3.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.2.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.3.S1_x_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.50.1.S1_at11/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_x_at9/111+9813599..9819528expressed protein
LOC_Os01g17070Os.43672.1.S1_at7/111+9813599..9819528expressed protein
LOC_Os01g17080OsAffx.22179.1.S1_at11/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17080OsAffx.23752.1.S1_at5/111+9819877..9822748transposon protein, putative, Mutator sub-class
LOC_Os01g17090OsAffx.2023.1.S1_at11/111+9824992..9825333hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_s_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17100OsAffx.20501.2.S1_x_at11/111+9828237..9828572hypothetical protein
LOC_Os01g17110OsAffx.20501.1.S1_at3/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17110OsAffx.21756.3.S1_x_at1/111+9832236..9832987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0003975molecular_functionUDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20501.1.S1_at--39--105392Chr12:401140..401574 (25 bp)
TTCACTCCGAAGACCGTGCTACTCT
NONE
OsAffx.20501.1.S1_at--1095--55156Chr12:23194149..23194173 (25 bp)
GAAAACTAGCCGTTGTAGCCCTGTC
NONE
OsAffx.20501.1.S1_at--708--7091Chr01:9830837..9830861 (25 bp)
GTCAGACCAACGTTGAGTGGCCGGT
NONE
OsAffx.20501.1.S1_at--1103--7053Chr01:9830860..9830884 (25 bp)
GTCAAACCGGCCATGGCTCGGTCAG
NONE
OsAffx.20501.1.S1_at--421--5231Chr01:9830908..9830932 (25 bp)
GAATACGACTCCGTCGGCTCTATAT
NONE
OsAffx.20501.1.S1_at--963--9651Chr01:9830998..9831018 (21 bp)
TCAGACCGACCTTGTGCGCTGTTAA
NONE
OsAffx.20501.1.S1_at--792--10811NONE
TTGTGCGCTGTTAACTAGCCATTAC
NONE
OsAffx.20501.1.S1_at--96--9451Chr01:9832216..9832238 (23 bp)
TCGGATGAACAGTCAGACCGCCATG
NONE
OsAffx.20501.1.S1_at--1080--1151Chr01:9832247..9832271 (25 bp)
AGTCAGACCGGACAGCATACCTCGG
LOC_Os01g17110
OsAffx.20501.1.S1_at--1157--291Chr01:9832263..9832287 (25 bp)
ATACCTCGGTCAGGCCGCTATAAGG
LOC_Os01g17110
OsAffx.20501.1.S1_at--360--3491Chr01:9832273..9832297 (25 bp)
CAGGCCGCTATAAGGGCTGCAGTCA
LOC_Os01g17110
Target Sequence 
TTCACTCCGAAGACCGTGCTACTCTGCAACGGCTAGAAAACTAGCCGTTGTAGCCCTGTCAGAGGGCCCCATCGGCCTGG
CCGGTCAGACCAACGTTGAGTGGCCGGTCAAACCGGCCATGGCTCGGTCAGACCGCCATCAGCTCGGTCTGACCGAATAC
GACTCCGTCGGCTCTATATCAGCCACCCCGAGCAACACCATCCCGGCCTCCAAGGGGCTGGTCAGACCGCCCATAAGCCG
CCGGTCAGACCGACCTTGTGCGCTGTTAACTAGCCATTACAGGGCAATCATTGAGCCCACTCAACCTGGCCGGTCTGACC
GCAGTGTAGTGGCCGGTCAGACCATCCACGGCCCGGTCAGACTGCTAGGGGCTCGGATGAACAGTCAGACCGCCATGGGG
GCTGCAGTCAGACCGGACAGCATACCTCGGTCAGGCCGCTATAAGGGCTGCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis