Browse Element(s) Details


OsAffx.20542.1.S1_at

Description gb:NM_195696.1
DB_XREF= gi:37532751
TID=OsAffx.20542.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0065C16.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1775011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20542.1.S1_at--512--4991Chr10:8654692..8654716 (25 bp)
GCAGGAATTATTTCAAATGCAGAAT
LOC_Os10g17750
OsAffx.20542.1.S1_at--162--5231Chr10:8654660..8654684 (25 bp)
GAATAGCAACAGTATGACCCAAGGT
LOC_Os10g17750
OsAffx.20542.1.S1_at--719--6891Chr10:8654563..8654673 (25 bp)
GTATGACCCAAGGTACAGATATTCA
LOC_Os10g17750
OsAffx.20542.1.S1_at--893--5551Chr10:8654468..8654492 (25 bp)
GAAAGAAGTTCTACCATCACACAAA
LOC_Os10g17750
OsAffx.20542.1.S1_at--616--6731Chr10:8654461..8654485 (25 bp)
GTTCTACCATCACACAAAATTCAGG
LOC_Os10g17750
OsAffx.20542.1.S1_at--833--8211Chr10:8654337..8654361 (25 bp)
GGAATAACTGCAACTCAAATACCAC
LOC_Os10g17750
OsAffx.20542.1.S1_at--978--9691Chr10:8654323..8654347 (25 bp)
TCAAATACCACAGAGCCCAGCATTG
LOC_Os10g17750
OsAffx.20542.1.S1_at--99--2151Chr10:8654314..8654338 (25 bp)
ACAGAGCCCAGCATTGCTACATGAT
LOC_Os10g17750
OsAffx.20542.1.S1_at--1071--4531Chr10:8654309..8654333 (25 bp)
GCCCAGCATTGCTACATGATGAGTT
LOC_Os10g17750
OsAffx.20542.1.S1_at--315--6771Chr10:8654287..8654311 (25 bp)
GTTAAACATGCTAAAACTCTCGAGC
LOC_Os10g17750
OsAffx.20542.1.S1_at--1008--9051Chr10:8654279..8654303 (25 bp)
TGCTAAAACTCTCGAGCAACACCGG
LOC_Os10g17750
Target Sequence 
GCAGGAATTATTTCAAATGCAGAATCAAATGAGAATAGCAACAGTATGACCCAAGGTACAGATATTCATCAACTACAAGA
TATAAGGGGAAGTTTAAAAGAACCAGAGAAGGACAAAACAGAAACAAAGCATATTCAAGAAAGAAGTTCTACCATCACAC
AAAATTCAGGAATAACTGCAACTCAAATACCACAGAGCCCAGCATTGCTACATGATGAGTTAAACATGCTAAAACTCTCG
AGCAACACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis