Browse Element(s) Details


OsAffx.20644.1.S1_at

Description tigr:9638.m01034
TID=OsAffx.20644.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1153011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11480OsAffx.20646.1.S1_at11/1110+6126694..6127385hypothetical protein
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20644.1.S1_at--57--5631Chr10:6152121..6152145 (25 bp)
GACACAGAAATTCAACCAGGCCCTC
LOC_Os10g11530
OsAffx.20644.1.S1_at--1069--2471Chr10:6152022..6152046 (25 bp)
AACACCAATGCGTCTGCAGCTGGGC
LOC_Os10g11530
OsAffx.20644.1.S1_at--141--4731Chr10:6152004..6152028 (25 bp)
GCTGGGCGATTCATTGGTCCATTAC
LOC_Os10g11530
OsAffx.20644.1.S1_at--429--7791Chr10:6151989..6152013 (25 bp)
GGTCCATTACCCAACTGGCATAGTG
LOC_Os10g11530
OsAffx.20644.1.S1_at--556--4851Chr10:6151972..6151996 (25 bp)
GCATAGTGGAATACGTACCGGTCAA
LOC_Os10g11530
OsAffx.20644.1.S1_at--415--8351Chr10:6151866..6151890 (25 bp)
TCCGTTCGTTAGTACCGCAGATACT
LOC_Os10g11530
OsAffx.20644.1.S1_at--572--7611Chr10:6151824..6151848 (25 bp)
GGGAAGCATCCGTTTTTGTATCAAT
LOC_Os10g11530
OsAffx.20644.1.S1_at--58--5231Chr10:6151642..6151666 (25 bp)
GAATGCCGGTAACCAGGTCCCTTGA
LOC_Os10g11530
OsAffx.20644.1.S1_at--1008--7231Chr10:6151626..6151650 (25 bp)
GTCCCTTGAGAAGAAGACGCTGGTA
LOC_Os10g11530
OsAffx.20644.1.S1_at--1014--7811Chr10:6151605..6151629 (25 bp)
GGTAAAATCTAGTACACCGGCTAAG
LOC_Os10g11530
OsAffx.20644.1.S1_at--842--7011Chr10:6151594..6151618 (25 bp)
GTACACCGGCTAAGAAACAAGAGAA
LOC_Os10g11530
Target Sequence 
GACACAGAAATTCAACCAGGCCCTCTACGACCTTGGAGCAAGCGTGAGCATCATGCCCAAGGATGTCTTCGACAAACTCA
ACTTTACAGTGTTGGCACCAACACCAATGCGTCTGCAGCTGGGCGATTCATTGGTCCATTACCCAACTGGCATAGTGGAA
TACGTACCGGTCAAGATACGGGATTTCTTCATCCCGGTTGACTTCGTGGTGTTGGATATGGAATCTGACAAGGAGACGCC
AATCATCTTGGGGCGTCCGTTCGTTAGTACCGCAGATACTAACATTGATGTGGGAACGGGAAGCATCCGTTTTTGTATCA
ATGGGAAGGAAGAAAAGTTTGAGTTCCAGCCAAGGACCGAGCAATGCTCCATGGTGAGGATAAAGTATGGGCCAAACCCG
CAAAATATTCATGTGGTCGAAGTGGAGCCACCCAAGACAGACAGCCTAGTAAAATTCATGCAGAATTTCCTGGAGAAGGG
AATGCCGGTAACCAGGTCCCTTGAGAAGAAGACGCTGGTAAAATCTAGTACACCGGCTAAGAAACAAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis