Browse Element(s) Details


OsAffx.20687.1.S1_at

Description gb:NM_195126.1
DB_XREF= gi:37531611
TID=OsAffx.20687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0011A24.32), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0961011/11retrotransposon protein, putative, unclassified
LOC_Os02g187406/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09580NANA10+4935490..4943156transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09590NANA10+4947051..4947536hypothetical protein
LOC_Os10g09600OsAffx.20689.1.S1_x_at11/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20673.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20695.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20687.1.S1_at--240--5291Chr10:4957618..4957642 (25 bp)
GAAGGCCATATACTACCCGAACGGT
LOC_Os10g09610
OsAffx.20687.1.S1_at--813--4213Chr02:10929916..10929940 (25 bp)
CCGAACGGTTCTCTCATTGATACAA
LOC_Os02g18740
OsAffx.20687.1.S1_at--1088--1072Chr02:10930004..10930028 (25 bp)
AGGGCATCATATGGCGCATTGGCAA
LOC_Os02g18740
OsAffx.20687.1.S1_at--705--8572Chr10:4957458..4957482 (25 bp)
TGGATTCCGCGGAGCTATTCAAGAA
LOC_Os10g09610
OsAffx.20687.1.S1_at--320--1151Chr10:4957376..4957400 (25 bp)
AGTCCGGGTCCTGGGATACTGACAA
LOC_Os10g09610
OsAffx.20687.1.S1_at--849--8092Chr02:10930191..10930215 (25 bp)
GGACGCAGAGGCCATCCTAAACATT
LOC_Os02g18740
OsAffx.20687.1.S1_at--6--2412Chr02:10930209..10930233 (25 bp)
AAACATTCGTTTATCTTCAAGGCTG
LOC_Os02g18740
OsAffx.20687.1.S1_at--401--7311Chr10:4957229..4957253 (25 bp)
GTGCTTATCATCTGGCAGTAGCTCT
LOC_Os10g09610
OsAffx.20687.1.S1_at--562--3451Chr10:4957214..4957238 (25 bp)
CAGTAGCTCTGGCACATGTTGATGA
LOC_Os10g09610
OsAffx.20687.1.S1_at--605--1372Chr02:10930360..10930384 (25 bp)
AGAGCCTGGAATGCCCTTTGGAAAT
LOC_Os02g18740
OsAffx.20687.1.S1_at--577--10293Chr02:10930411..10930435 (25 bp)
TTTGCCTGGCGAGCTATTACTAACA
LOC_Os02g18740
Target Sequence 
GAAGGCCATATACTACCCGAACGGTTCTCTCATTGATACAAGTTTTGGAGGTAATGCCTCTCCAGGCTGGAGAGCGATCG
AATATGGTTTAGAATTACTGAAGAAGGGCATCATATGGCGCATTGGCAATGGTAAATCAGTCAGATTGTGGAGGGATCCC
TGGATTCCGCGGAGCTATTCAAGAAGACCCATCTCAGCTAAAAGAAATTGCAGACTGAGATGGGTTTCAGACCTGATTGA
TCAGTCCGGGTCCTGGGATACTGACAAAATCTCGCAGCATTTCCTGCCCATGGACGCAGAGGCCATCCTAAACATTCGTT
TATCTTCAAGGCTGGAAGATGATTTCATTGCTTGGCATCCGGATAAACTGGGGAGATTTTCTGTCAGAAGTGCTTATCAT
CTGGCAGTAGCTCTGGCACATGTTGATGAAGGCTCGAGTTCGTCCGGGAATGGAAATAGCAGAGCCTGGAATGCCCTTTG
GAAATGCAATGCGCCCCAAAAGGTGAAGATTTTTGCCTGGCGAGCTATTACTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis