Browse Element(s) Details


OsAffx.20725.1.S1_at

Description tigr:9638.m00602
TID=OsAffx.20725.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0686011/11hypothetical protein
LOC_Os11g190302/11hypothetical protein
LOC_Os03g418001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06810OsAffx.20725.2.S1_at11/1110+3535385..3537759hypothetical protein
LOC_Os10g06820NANA10+3542149..3543063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06830OsAffx.22848.4.S1_at2/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06830OsAffx.22848.4.S1_x_at1/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06840NANA10+3555193..3558328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06860OsAffx.20725.1.S1_x_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860OsAffx.20725.1.S1_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860Os.46610.1.A1_x_at1/1110+3561389..3567199hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20725.1.S1_at--78--791Chr10:3566696..3566720 (25 bp)
ATGTGAAACTTAGGCACAACTACGA
LOC_Os10g06860
OsAffx.20725.1.S1_at--148--411Chr10:3566904..3566928 (25 bp)
ATCAGATCTCCACGGAGGCCAAGAG
LOC_Os10g06860
OsAffx.20725.1.S1_at--1050--1271Chr10:3566907..3566931 (25 bp)
AGATCTCCACGGAGGCCAAGAGAAT
LOC_Os10g06860
OsAffx.20725.1.S1_at--309--3331Chr10:3566950..3567029 (25 bp)
GACGTCGAGAACAGTTACTTTTTCG
LOC_Os10g06860
OsAffx.20725.1.S1_at--860--5471Chr10:3567017..3567037 (21 bp)
GAACAGTTACTTTTTCGTGCTTTCT
LOC_Os10g06860
OsAffx.20725.1.S1_at--460--1211Chr10:3567017..3567041 (25 bp)
AGTTACTTTTTCGTGCTTTCTTGCA
LOC_Os10g06860
OsAffx.20725.1.S1_at--691--9893Chr11:10830994..10831014 (21 bp)
TACTTTTTCGTGCTTTCTTGCACGA
LOC_Os11g19030
OsAffx.20725.1.S1_at--1112--9072Chr11:10831000..10831465 (25 bp)
TGCTTTCTTGCACGAAGATACAAAT
LOC_Os11g19030
OsAffx.20725.1.S1_at--634--6611Chr10:3567059..3567083 (25 bp)
GTTGTAAACAGGACGTTCCCACCTG
LOC_Os10g06860
OsAffx.20725.1.S1_at--274--6711Chr10:3567073..3567097 (25 bp)
GTTCCCACCTGACCTATGCAGGAAA
LOC_Os10g06860
OsAffx.20725.1.S1_at--714--3851Chr10:3567081..3567105 (25 bp)
CTGACCTATGCAGGAAAGCAGCCAA
LOC_Os10g06860
Target Sequence 
ATGTGAAACTTAGGCACAACTACGACGACGGCAAGATCACATCGGTGGTGTATGATGTGGTAGAGCTACAGCACAACCAC
CCTCTAACGCCGTCCCCTTCGGCGGTAAAGCACATGCGTGCACATAAGAACCACGACGACACAGTGATGCAATTTGTGGA
CACTATGCAAGAAAGTCACGTGCCGCAAAGTTGTATCATGGGCGTTCTATCAGATCTCCACGGAGGCCAAGAGAATATCC
CTTTCACTTCCCGCGACGTCGAGAACAGTTACTTTTTCGTGCTTTCTTGCACGAAGATACAAATGGGAGTTGTAAACAGG
ACGTTCCCACCTGACCTATGCAGGAAAGCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis