Browse Element(s) Details


OsAffx.20967.1.S1_x_at

Description tigr:9635.m01169
TID=OsAffx.20967.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1194010/11hypothetical protein
LOC_Os11g455501/11expressed protein
LOC_Os10g091301/11hypothetical protein
LOC_Os02g587501/11hypothetical protein
LOC_Os02g587801/11retrotransposon protein, putative, unclassified
LOC_Os09g273101/11hypothetical protein
LOC_Os12g128891/11
LOC_Os01g067101/11hypothetical protein
LOC_Os05g358501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11890OsAffx.16216.1.S1_at11/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11890Os.52782.1.S1_at1/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11900Os.4414.1.S1_x_at7/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11900Os.8502.5.S1_x_at5/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11910Os.4414.1.S1_x_at11/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11910Os.8502.5.S1_x_at5/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.4414.1.S1_x_at11/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.8502.5.S1_x_at5/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein
LOC_Os07g11980OsAffx.16217.1.S1_x_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980OsAffx.16217.2.S1_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_at7/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_x_at6/117+6639949..6641380hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20967.1.S1_x_at--734--32315Chr12:16866455..16866474 (20 bp)
CAAGCAGCTTAATCGGAGGTTCTCC
NONE
OsAffx.20967.1.S1_x_at--213--9451Chr07:6617431..6617455 (25 bp)
TCGGAGGTTCTCCTGTAGGCCTATA
LOC_Os07g11940
OsAffx.20967.1.S1_x_at--1009--7991Chr07:6617433..6617457 (25 bp)
GGAGGTTCTCCTGTAGGCCTATACC
LOC_Os07g11940
OsAffx.20967.1.S1_x_at--147--1011Chr07:6617435..6617459 (25 bp)
AGGTTCTCCTGTAGGCCTATACCTA
LOC_Os07g11940
OsAffx.20967.1.S1_x_at--991--871NONE
AGGCCTATACCTACAGTGAGACTAT
NONE
OsAffx.20967.1.S1_x_at--312--292Chr07:6617453..6617820 (25 bp)
ATACCTACAGTGAGACTATCTACTT
LOC_Os07g11940
OsAffx.20967.1.S1_x_at--1094--7376Chr07:6619811..6619835 (25 bp)
GTGAGACTATCTACTTTCAATGCTA
NONE
OsAffx.20967.1.S1_x_at--4--5716Chr07:6619815..6619839 (25 bp)
GACTATCTACTTTCAATGCTAGAAT
NONE
OsAffx.20967.1.S1_x_at--682--10015Chr07:6619834..6619858 (25 bp)
TAGAATAAACTACTCAAAGCAACGA
NONE
OsAffx.20967.1.S1_x_at--517--1992Chr07:6617839..6617863 (25 bp)
ACTCAAAGCAACGAGTTTGTCAACA
LOC_Os07g11940
OsAffx.20967.1.S1_x_at--256--6071Chr07:6617851..6617875 (25 bp)
GAGTTTGTCAACAAGAACAACCTCA
LOC_Os07g11940
Target Sequence 
CAAGCAGCTTAATCGGAGGTTCTCCTGTAGGCCTATACCTACAGTGAGACTATCTACTTTCAATGCTAGAATAAACTACT
CAAAGCAACGAGTTTGTCAACAAGAACAACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20967.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis