Browse Element(s) Details


OsAffx.21149.1.S1_x_at

Description gb:NM_193766.1
DB_XREF= gi:34914615
GEN=P0520B06.21
TID=OsAffx.21149.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0520B06.21 (P0520B06.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g328107/11hypothetical protein
LOC_Os11g014001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21149.1.S1_x_at--566--4355Chr12:19998720..19998899 (25 bp)
CCAGTTGTGGGTGGCGGAGCGGGCC
NONE
OsAffx.21149.1.S1_x_at--782--6211Chr01:18331462..18331486 (25 bp)
GAGGCGGAGGCCAACCGGGTGCACG
NONE
OsAffx.21149.1.S1_x_at--1047--3091Chr01:18331504..18331528 (25 bp)
GTAGGCTCCCCCTCCTCGTTGTGGG
NONE
OsAffx.21149.1.S1_x_at--266--9311Chr01:18331604..18331628 (25 bp)
TCCCCGTGCCAGGATCGGCGATGGA
NONE
OsAffx.21149.1.S1_x_at--541--6691Chr01:18331643..18331667 (25 bp)
GTTCCACCGAGGACGCAGGCGTGAA
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--744--4351Chr01:18331696..18331720 (25 bp)
CCAGATCCAAATGCGAGCTCGGTGA
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--225--3791Chr01:18331713..18331737 (25 bp)
CTCGGTGATGACACATGGAGCTTGG
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--935--671Chr01:18331720..18331744 (25 bp)
ATGACACATGGAGCTTGGGTCGGCG
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--764--3311Chr01:18331724..18331748 (25 bp)
CACATGGAGCTTGGGTCGGCGGCCG
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--412--3031Chr01:18331789..18331813 (25 bp)
AATGCCGGCACACTAGTGCCAGCGC
LOC_Os01g32810
OsAffx.21149.1.S1_x_at--528--7391Chr01:18331906..18331930 (25 bp)
GTGATGGAGTCGACGGAGCAGAGCT
LOC_Os01g32810
Target Sequence 
CCAGTTGTGGGTGGCGGAGCGGGCCCGAGGACGACGGCGGCCACCGGAGGCGGAGGCCAACCGGGTGCACGGGGACGCGC
GGTGGCCGGTAGGCTCCCCCTCCTCGTTGTGGGCGCACGGGGACGCACGGGGACACCACCGCCACTGCAGCTCCTCCTCC
GAGCCGTCGCGCCGCGCCCCATCCCACCTCCCCGTGCCAGGATCGGCGATGGAGACTGGCGGACGCGGTTCCACCGAGGA
CGCAGGCGTGAATGGCGACCGGGAATCCCGCTCCACCACCCCAGATCCAAATGCGAGCTCGGTGATGACACATGGAGCTT
GGGTCGGCGGCCGCGCGTGCGTCGGCAGCAGCGGCGGCGGCCACGACAGCAACAATGCCGGCACACTAGTGCCAGCGCCG
GTGCCGGCGTCGTCGTCGTCGGTGAGCGCGGGGAGGCCGAGCCGGCGGCCGCGGTGGTGGCGGATGTGGCTGCGCGAGAG
CGAGGCGGTGGTGATGGAGTCGACGGAGCAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21149.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis