Browse Element(s) Details


OsAffx.21171.4.S1_x_at

Description gb:NM_184747.1
DB_XREF= gi:34896583
GEN=OSJNBa0026A15.10
TID=OsAffx.21171.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0026A15.10), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3688011/11retrotransposon protein, putative, unclassified
LOC_Os05g377506/11retrotransposon protein, putative, unclassified
LOC_Os07g426806/11transposon protein, putative, unclassified
LOC_Os09g152706/11retrotransposon protein, putative, unclassified
LOC_Os03g614005/11retrotransposon protein, putative, unclassified
LOC_Os01g340403/11retrotransposon protein, putative, unclassified
LOC_Os02g332003/11retrotransposon protein, putative, unclassified
LOC_Os12g288303/11retrotransposon protein, putative, unclassified
LOC_Os04g546603/11retrotransposon protein, putative, unclassified
LOC_Os12g395902/11retrotransposon protein, putative, unclassified
LOC_Os08g294902/11retrotransposon protein, putative, unclassified
LOC_Os12g203002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g036602/11retrotransposon protein, putative, unclassified
LOC_Os06g111102/11transposon protein, putative, unclassified
LOC_Os10g102142/11transposon protein, putative, unclassified
LOC_Os05g396202/11retrotransposon protein, putative, unclassified
LOC_Os01g136201/11retrotransposon protein, putative, unclassified
LOC_Os01g478601/11retrotransposon protein, putative, unclassified
LOC_Os07g494301/11retrotransposon protein, putative, unclassified
LOC_Os08g246901/11retrotransposon protein, putative, unclassified
LOC_Os09g081801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g374701/11retrotransposon protein, putative, unclassified
LOC_Os01g215301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21171.4.S1_x_at--495--8313Chr04:32302291..32302315 (25 bp)
GGCTAGACATCCTTGGACCGTTCAA
LOC_Os04g54660
OsAffx.21171.4.S1_x_at--445--8710Chr10:12865820..12865844 (25 bp)
AGGCGGGTATCAGCACTTGTACGTC
NONE
OsAffx.21171.4.S1_x_at--874--70712Chr09:9313197..9313221 (25 bp)
GTCAAAATCGACAAGCATTCTGCTC
LOC_Os09g15270
OsAffx.21171.4.S1_x_at--837--7592Chr03:20419804..20419828 (25 bp)
GGGCATCACGTCTCGATTCAGAGTG
LOC_Os03g36880
OsAffx.21171.4.S1_x_at--954--1331Chr03:20419823..20419847 (25 bp)
AGAGTGCCCAATCGTGTCATTACAG
LOC_Os03g36880
OsAffx.21171.4.S1_x_at--1127--12116Chr12:17041901..17042369 (25 bp)
AGTTCACCAGTGAGCTGTTTGGCGA
LOC_Os12g28830
OsAffx.21171.4.S1_x_at--665--8778Chr09:9313306..9313330 (25 bp)
TGTTTGGCGATTACTGTGACGACAT
LOC_Os09g15270
OsAffx.21171.4.S1_x_at--444--10179Chr12:17041945..17041968 (24 bp)
TATCAAATTGTGCTTTGCCTCACCC
LOC_Os12g28830
OsAffx.21171.4.S1_x_at--835--16914Chr12:17042001..17042024 (24 bp)
AGCCAACGCCGAAATCCTCAAAGGA
LOC_Os12g28830
OsAffx.21171.4.S1_x_at--953--171Chr03:20420101..20420125 (25 bp)
ATTTTTCTTGGTGTACTGCGCCGAA
LOC_Os03g36880
OsAffx.21171.4.S1_x_at--433--6711Chr03:20420154..20420178 (25 bp)
GTTCGCCTCGTGTCGCACTGTACAA
LOC_Os03g36880
Target Sequence 
GGCTAGACATCCTTGGACCGTTCAAGGCGGCTCGAGGCGGGTATCAGCACTTGTACGTCGCCATCGACAAATTCACCAAG
TGGCCCGAGGCCTACCCAGTCGTCAAAATCGACAAGCATTCTGCTCTTAAGTTCATCAGGGGCATCACGTCTCGATTCAG
AGTGCCCAATCGTGTCATTACAGACAATGGCACCCAGTTCACCAGTGAGCTGTTTGGCGATTACTGTGACGACATGGGTA
TCAAATTGTGCTTTGCCTCACCCGCCCACCCCAAGAGCAACGGCCAAGTCGAGCGAGCCAACGCCGAAATCCTCAAAGGA
CTCAAGACCAAGACGTACAATGTCCTGAAGAAGCACGGGGATTCATGGCTTGAGGAGTTGCCCGCCGTGTTGTGGGCAAA
TCGGACCACTCCAAGCCGCGCCACGGGGGAAACACCATTTTTCTTGGTGTACTGCGCCGAAGCGGTCCTACCCTCCGAGC
TTTCCCTGGGTTCGCCTCGTGTCGCACTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21171.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis