Browse Element(s) Details


OsAffx.2127.1.S1_at

Description tigr:9629.m02944
TID=OsAffx.2127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3162911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31590NANA1+17614158..17614433transposon protein, putative, unclassified
LOC_Os01g31600NANA1+17621175..17622995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31610Os.35596.1.S1_at11/111+17628813..17630551tyrosyl-tRNA synthetase family protein, expressed
LOC_Os01g31629OsAffx.2127.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629Os.5345.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.25836.1.S1_at4/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.19690.1.S1_at1/111+17636151..17652606expressed protein
LOC_Os01g31629Os.17546.2.S1_x_at1/111+17636151..17652606expressed protein
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified
LOC_Os01g31660NANA1+17657233..17659658retrotransposon protein, putative, unclassified
LOC_Os01g31670NANA1+17662625..17664953retrotransposon protein, putative, unclassified
LOC_Os01g31680Os.1606.2.S1_a_at10/111+17668048..17673251Sec-independent protein translocase TatC containing protein, expressed
LOC_Os01g31690Os.28438.1.S1_x_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_s_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.2.S1_a_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_x_at8/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2127.1.S1_at--905--9231Chr01:17648646..17649112 (25 bp)
TCCATTGCCGCTGTAATGCTGCCGG
LOC_Os01g31629
OsAffx.2127.1.S1_at--865--3371Chr01:17648601..17648625 (25 bp)
CACCAGGCCAGGACGGCGAGCAATG
LOC_Os01g31629
OsAffx.2127.1.S1_at--32--6111Chr01:17648574..17648598 (25 bp)
GAGTCGGCGACCAACGGCTGAGCAT
LOC_Os01g31629
OsAffx.2127.1.S1_at--1162--1691Chr01:17648565..17648589 (25 bp)
ACCAACGGCTGAGCATGAGCAGCAG
LOC_Os01g31629
OsAffx.2127.1.S1_at--454--1531Chr01:17648520..17648544 (25 bp)
AGCAGTGGCGAGACGAACAGACACA
LOC_Os01g31629
OsAffx.2127.1.S1_at--1069--5491Chr01:17648506..17648530 (25 bp)
GAACAGACACACAGCCGCGCAGATG
LOC_Os01g31629
OsAffx.2127.1.S1_at--1047--4211Chr01:17648492..17648516 (25 bp)
CCGCGCAGATGCTGTATTGTGGTTT
LOC_Os01g31629
OsAffx.2127.1.S1_at--213--6171Chr01:17648339..17648359 (21 bp)
GAGGAGGCCTTCCACGACTTGCTTA
LOC_Os01g31629
OsAffx.2127.1.S1_at--960--10671Chr01:17648330..17648354 (25 bp)
TTCCACGACTTGCTTATGGGCCAGG
LOC_Os01g31629
OsAffx.2127.1.S1_at--819--7651Chr01:17648281..17648305 (25 bp)
GGGTTCCCATGTGGTGAAAATAAGG
LOC_Os01g31629
OsAffx.2127.1.S1_at--1141--6651Chr01:17647585..17647609 (25 bp)
GTTGACGACAAGATTAGCTGATGCT
LOC_Os01g31629
Target Sequence 
TCCATTGCCGCTGTAATGCTGCCGGCGGCCGGCTAGGGCGACCAGCACCAGGCCAGGACGGCGAGCAATGGCGAGTCGGC
GACCAACGGCTGAGCATGAGCAGCAGGAGTAGACGGCGACTCGGCGAGCAGTGGCGAGACGAACAGACACACAGCCGCGC
AGATGCTGTATTGTGGTTTGGAAAAAGAAAGAAAAGAAAAAGCAAAAAACGGGAGTCGAGGAGGCCTTCCACGACTTGCT
TATGGGCCAGGGGTGGTGCACGAATTTGGGCCAAGGGGTTCCCATGTGGTGAAAATAAGGGGTTGACGACAAGATTAGCT
GATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis