Browse Element(s) Details


OsAffx.21295.1.S1_at

Description gb:NM_193154.1
DB_XREF= gi:34913391
GEN=B1147B04.19
TID=OsAffx.21295.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1147B04.19 (B1147B04.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g343008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified
LOC_Os01g34320OsAffx.2152.1.S1_at11/111+19247667..19248375hypothetical protein
LOC_Os01g34330Os.11689.1.S1_at11/111+19250456..19266126BAH domain containing protein, expressed
LOC_Os01g34330Os.11689.2.S1_at10/111+19250456..19266126BAH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21295.1.S1_at--504--9091Chr01:19234255..19234279 (25 bp)
TGCTCAAGCGGCAAAGGCAGCTCCT
NONE
OsAffx.21295.1.S1_at--870--4071Chr01:19234311..19234335 (25 bp)
CGACCTCCAGCGGAGACAACGGAAA
NONE
OsAffx.21295.1.S1_at--134--311Chr01:19234349..19234373 (25 bp)
ATACCGACAAGTGGTGGGCGGCATC
LOC_Os01g34300
OsAffx.21295.1.S1_at--849--8271Chr01:19234368..19234392 (25 bp)
GGCATCCCTCATCGTCGATCTAGTG
LOC_Os01g34300
OsAffx.21295.1.S1_at--513--9611NONE
TCATCGTCGATCTAGTGGGCCCGAT
NONE
OsAffx.21295.1.S1_at--802--9411Chr01:19234379..19234488 (25 bp)
TCGTCGATCTAGTGGGCCCGATCCG
LOC_Os01g34300
OsAffx.21295.1.S1_at--440--9071Chr01:19234587..19234611 (25 bp)
TGCTTGCGGAGCTCAGTCCACCTCT
LOC_Os01g34300
OsAffx.21295.1.S1_at--576--1751Chr01:19234606..19234630 (25 bp)
ACCTCTACTTCGTCGGTTGCTGCTT
LOC_Os01g34300
OsAffx.21295.1.S1_at--642--7911Chr01:19234620..19234644 (25 bp)
GGTTGCTGCTTCCTCCGTCTCATTG
LOC_Os01g34300
OsAffx.21295.1.S1_at--273--10671Chr01:19234629..19234653 (25 bp)
TTCCTCCGTCTCATTGCTTGCCGAG
LOC_Os01g34300
OsAffx.21295.1.S1_at--1120--3591Chr01:19234640..19234664 (25 bp)
CATTGCTTGCCGAGCCTGGCCACTG
LOC_Os01g34300
Target Sequence 
TGCTCAAGCGGCAAAGGCAGCTCCTCCTCGGCCTCTGTTGGCGCGCTCCTCCTCTTCGACCTCCAGCGGAGACAACGGAA
AGGATGGAGAGGGGATACCGACAAGTGGTGGGCGGCATCCCTCATCGTCGATCTAGTGGGCCCGATCCGCCACCACCCGG
GACCCCCGTGCCATTCCTTGTCGCCCTCCACCTACGGCTCGCTGCTTGCGGAGCTCAGTCCACCTCTACTTCGTCGGTTG
CTGCTTCCTCCGTCTCATTGCTTGCCGAGCCTGGCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis