Browse Element(s) Details


OsAffx.21308.2.S1_x_at

Description tigr:9631.m05583
TID=OsAffx.21308.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5692011/11expressed protein
LOC_Os07g432002/11retrotransposon protein, putative, LINE subclass
LOC_Os04g443801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g56960Os.7686.1.S1_at11/113+32379821..32382915pentatricopeptide, putative, expressed
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21308.2.S1_x_at--249--9691Chr03:32357823..32357847 (25 bp)
TCACGCTTGTCGCTGATAAGGCCAT
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--139--8831Chr03:32357810..32357834 (25 bp)
TGATAAGGCCATGACTGCGCCACCT
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--867--8451Chr03:32357766..32357790 (25 bp)
TGGCCATCCGGTCTTTTACTGGGAC
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--983--10471Chr03:32357751..32357775 (25 bp)
TTACTGGGACTGAAGCCTGGTTCGG
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--374--4271Chr03:32357736..32357760 (25 bp)
CCTGGTTCGGCAGCACGGCATGGAA
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--1072--2171Chr03:32357644..32357668 (25 bp)
ACACTGACAACCTGCCAGCAAATTG
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--775--3593Chr07:25887628..25887652 (25 bp)
CTTGGAAGATCTGGCCAGCGACGCT
LOC_Os07g43200
OsAffx.21308.2.S1_x_at--829--9032Chr07:25887693..25887713 (21 bp)
TGCTTCCCCAAGAGATGACCCCGAT
LOC_Os07g43200
OsAffx.21308.2.S1_x_at--467--1691Chr03:32357385..32357409 (25 bp)
AGCCAGGCTCGCTGCCGGAACGTGC
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--612--5451Chr03:32357368..32357392 (25 bp)
GAACGTGCATCCTCGCCATGTGCCA
LOC_Os03g56920
OsAffx.21308.2.S1_x_at--1104--4151Chr03:32357298..32357322 (25 bp)
CGCCGCGCTTGACGCTTCTATGTCT
LOC_Os03g56920
Target Sequence 
TCACGCTTGTCGCTGATAAGGCCATGACTGCGCCACCTCCGACGGCGACAGAGGACCTGGCCATCCGGTCTTTTACTGGG
ACTGAAGCCTGGTTCGGCAGCACGGCATGGAAGCCGGTGCCTGTTGCGCGCGTCTTTGGCCGCATCAGGGAGGCCTTGCC
GGCCACGCCAGCGGTCGACACACTGACAACCTGCCAGCAAATTGAGGAGGCGCTGATGCGCCTTGAGCTGGCTGTCGCTG
CAGCTCGCACCCCAGGCGATGACACTCTCCTACCACAGCCCATGTCACCGGCACCTCTCGCAGCGTCCCCGCCTCGCCGC
TTGGAAGATCTGGCCAGCGACGCTGCGGCCGACAAGATTCTGCCGGCGCTGCTCCCCGGGGCGCTGCTTCCCCAAGAGAT
GACCCCGATGCCAGCCACCCCGCCCCCGTCAGCGCTGGAGCCAGGCTCGCTGCCGGAACGTGCATCCTCGCCATGTGCCA
TCGCGGGACTGTTCACCTCGCCTCCGCCGGCTATCATTGCGTCGCCGCCGCGCTTGACGCTTCTATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21308.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis