Browse Element(s) Details


OsAffx.2132.2.S1_s_at

Description tigr:9629.m03028
TID=OsAffx.2132.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein
LOC_Os01g32450NANA1+18122729..18123040hypothetical protein
LOC_Os01g32460Os.45928.1.S1_at11/111+18125112..18125866expressed protein
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2132.2.S1_s_at--316--8231Chr01:18116649..18116673 (25 bp)
GGCAAGCGGCGACACTCACCCACGG
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--488--7551Chr01:18116676..18116700 (25 bp)
GTGGCGCGGCACCAAGGCGTGGCAA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--709--1711Chr01:18116707..18116731 (25 bp)
ACCACGGCAAGCCACGGTGCGGCAA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--120--8231Chr01:18116712..18116736 (25 bp)
GGCAAGCCACGGTGCGGCAAGGAGA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--871--4291Chr01:18116959..18116983 (25 bp)
GCGAATGGCGGATAGTGTAGCCCCT
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--204--871Chr01:18116963..18116987 (25 bp)
ATGGCGGATAGTGTAGCCCCTGAGC
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--233--291Chr01:18116970..18116994 (25 bp)
ATAGTGTAGCCCCTGAGCTCGTGAA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--294--6971Chr01:18116975..18116999 (25 bp)
GTAGCCCCTGAGCTCGTGAACCTGA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--1067--4691Chr01:18117008..18117032 (25 bp)
GCGGCGCGGCTGCTAGTGGTGACTA
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--806--1071Chr01:18117022..18117046 (25 bp)
AGTGGTGACTAGTGGTGGCCGGAGT
LOC_Os01g32430
OsAffx.2132.2.S1_s_at--68--4711Chr01:18117051..18117075 (25 bp)
GCGGCGGCTGCGGTTGCAAGAGCGA
LOC_Os01g32430
Target Sequence 
GGCAAGCGGCGACACTCACCCACGGCGGTGGCGCGGCACCAAGGCGTGGCAACGGCGCACCACGGCAAGCCACGGTGCGG
CAAGGAGAGAGAGGAGGAAAAAGAGGAAAGGGGAGGCCTCACCGATGGCGACGACGAGGGCAACGACGGCGGCAAGGGGC
GGACGAGTTCCGGAGTAAACCTAGGAAGAAAATGAGAGGGATTAGAGAGAATGAAGGTGACGTGCGAATGGCGGATAGTG
TAGCCCCTGAGCTCGTGAACCTGACGGCAGCGGCGGCGCGGCTGCTAGTGGTGACTAGTGGTGGCCGGAGTGGTGGCGGC
GGCTGCGGTTGCAAGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2132.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis