Browse Element(s) Details


OsAffx.21322.1.S1_at

Description tigr:9629.m04278
TID=OsAffx.21322.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pectinesterase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4434011/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44310Os.27848.1.S1_at11/111+25744106..25752571expressed protein
LOC_Os01g44320OsAffx.23657.1.S1_at11/111+25754323..25755180hypothetical protein
LOC_Os01g44330Os.45945.1.S1_at11/111+25765930..25767927Multicopper oxidase family protein, expressed
LOC_Os01g44340OsAffx.21322.1.S1_at11/111+25769450..25770894Pectinesterase family protein
LOC_Os01g44350OsAffx.2233.1.S1_x_at11/111+25772094..25772717hypothetical protein
LOC_Os01g44360Os.23714.1.A1_at11/111+25775244..25777490CBS domain containing protein, expressed
LOC_Os01g44370NANA1+25784429..25784710myb family transcription factor, putative
LOC_Os01g44380OsAffx.21320.1.S1_at11/111+25786072..25786392hypothetical protein
LOC_Os01g44390Os.41164.1.S1_at11/111+25788851..25790532myb family transcription factor, putative, expressed
LOC_Os01g44394Os.7481.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.56992.1.S1_at11/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed
LOC_Os01g44394Os.24693.1.A1_s_at1/111+25793211..25801105mRNA-associated protein mrnp 41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21322.1.S1_at--208--2671Chr01:25770347..25770525 (25 bp)
AAGCGCCTGACGTTTCAGAACACGT
LOC_Os01g44340
OsAffx.21322.1.S1_at--765--9031Chr01:25770260..25770284 (25 bp)
TGCAGGTTCGTGTCGTTCCAGGACA
LOC_Os01g44340
OsAffx.21322.1.S1_at--956--9891Chr01:25770209..25770233 (25 bp)
TACTACCGCGGCTGCTACGTGCAGG
LOC_Os01g44340
OsAffx.21322.1.S1_at--253--8411Chr01:25770185..25770209 (25 bp)
GGCGCCACCGACTTCATATTCGGAA
LOC_Os01g44340
OsAffx.21322.1.S1_at--714--9571Chr01:25770172..25770196 (25 bp)
TCATATTCGGAAACGGCCGGGCTCT
LOC_Os01g44340
OsAffx.21322.1.S1_at--909--1771Chr01:25770165..25770185 (21 bp)
AACGGCCGGGCTCTGTTTGACAAAT
LOC_Os01g44340
OsAffx.21322.1.S1_at--674--9471Chr01:25769944..25770174 (25 bp)
TCTGTTTGACAAATGCCACCTGCAC
LOC_Os01g44340
OsAffx.21322.1.S1_at--856--8111Chr01:25769571..25769595 (25 bp)
GGACGGCGTTCTATGGGCAGTACCA
LOC_Os01g44340
OsAffx.21322.1.S1_at--252--8651Chr01:25769558..25769582 (25 bp)
TGGGCAGTACCAGTGCTACGGCGAC
LOC_Os01g44340
OsAffx.21322.1.S1_at--385--9931Chr01:25769542..25769566 (25 bp)
TACGGCGACGGATCGAAGACCGACG
LOC_Os01g44340
OsAffx.21322.1.S1_at--413--1071Chr01:25769515..25769539 (25 bp)
AGGGTTGCCTGGTCTCACGACCTGA
LOC_Os01g44340
Target Sequence 
AAGCGCCTGACGTTTCAGAACACGTTCGGGGACAGCGCGCCGGCGGTGGCGGTGAGGGTCGCCGGAGACAGGGCGGCGTT
CTACGGGTGCAGGTTCGTGTCGTTCCAGGACACGCTCCTCGACGAGACGGGGCGGCACTACTACCGCGGCTGCTACGTGC
AGGGCGCCACCGACTTCATATTCGGAAACGGCCGGGCTCTGTTTGACAAATGCCACCTGCACTCCACGTCGCCCGACGGC
GCCGGCGGGGCGTTCACGGCGCAGCAGCGGTCGTCGGAATCGGAGGAGACGGGGTACAGCTTCGTGGGGTGCAAGCTGAC
CGGCCTCGGCGCCGGCACCTCCATCCTGGGCCGGCCGTGGGGGCCATACTCCCGCGTCGTCTTCGCGCTCACCTACATGT
CCTCCACCGTCAGGCCCCAAGGCTGGGACGACTGGGGCGACCCCTCCAATCAGCGGACGGCGTTCTATGGGCAGTACCAG
TGCTACGGCGACGGATCGAAGACCGACGGCAGGGTTGCCTGGTCTCACGACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis