Browse Element(s) Details


OsAffx.2147.1.S1_at

Description tigr:9629.m03175
TID=OsAffx.2147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g027002/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02690OsAffx.27425.1.S1_at11/116+962221..962906hypothetical protein
LOC_Os06g02700OsAffx.2147.1.S1_at2/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_x_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.30486.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02710OsAffx.27426.2.S1_s_at11/116+970746..973333hypothetical protein
LOC_Os06g02710OsAffx.27426.2.S1_at11/116+970746..973333hypothetical protein
LOC_Os06g02720NANA6+973706..975161transposon protein, putative, Pong sub-class
LOC_Os06g02730Os.51195.1.S1_at11/116+977317..978766nucleoid DNA-binding protein cnd41, putative, expressed
LOC_Os06g02740NANA6+989762..992282Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2147.1.S1_at--513--5511Chr01:18957691..18957715 (25 bp)
GAACAATCTCCTGAGCCGATAGTTG
NONE
OsAffx.2147.1.S1_at--514--2231Chr01:18957689..18957713 (25 bp)
ACAATCTCCTGAGCCGATAGTTGAA
NONE
OsAffx.2147.1.S1_at--639--10251Chr01:18957584..18957608 (25 bp)
TTTGATCAAGGTATCAGTTGACGAT
NONE
OsAffx.2147.1.S1_at--282--411Chr01:18957572..18957596 (25 bp)
ATCAGTTGACGATTTAATTATCCAG
NONE
OsAffx.2147.1.S1_at--585--11Chr01:18957561..18957585 (25 bp)
ATTTAATTATCCAGAAAAGCCAGCT
NONE
OsAffx.2147.1.S1_at--257--8871Chr01:18957524..18957548 (25 bp)
TGATGAACAACAACAGTATCGGCTT
NONE
OsAffx.2147.1.S1_at--398--8971Chr01:18957521..18957545 (25 bp)
TGAACAACAACAGTATCGGCTTGGG
NONE
OsAffx.2147.1.S1_at--889--8611Chr01:18957500..18957524 (25 bp)
TGGGGGCAAGCATATCAGTATCAAC
NONE
OsAffx.2147.1.S1_at--420--10152Chr06:965901..966397 (25 bp)
TATCAGTATCAACATGATGGGCTAT
LOC_Os06g02700
OsAffx.2147.1.S1_at--406--711Chr01:18957475..18957499 (25 bp)
ATGATGGGCTATATCAATATCGGCC
NONE
OsAffx.2147.1.S1_at--355--4092Chr06:966335..966355 (21 bp)
CGAACTTCATCAATATGGGCATGGT
LOC_Os06g02700
Target Sequence 
GAACAATCTCCTGAGCCGATAGTTGAAATACTTCAAGATACAGTTGATGAAGCAGTTCATCGCGCATTGTTTAATCAATC
TGGAGTTTTGGCGGATACGTTACAAAATTTGATCAAGGTATCAGTTGACGATTTAATTATCCAGAAAAGCCAGCTCGGGG
GGCAGATTGATGAACAACAACAGTATCGGCTTGGGGGCAAGCATATCAGTATCAACATGATGGGCTATATCAATATCGGC
CAGACGAACTTCATCAATATGGGCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis