Browse Element(s) Details


OsAffx.21518.1.S1_at

Description gb:NM_191903.1
DB_XREF= gi:34910889
GEN=P0003E08.12
TID=OsAffx.21518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003E08.12 (P0003E08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g475206/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21518.1.S1_at--989--611NONE
ATGCTGTCCATACAGTAGCCGATAC
NONE
OsAffx.21518.1.S1_at--768--7191NONE
GTCCATACAGTAGCCGATACGTCGG
NONE
OsAffx.21518.1.S1_at--676--2131Chr01:27488304..27488327 (24 bp)
ACAGTAGCCGATACGTCGGTCCAAT
LOC_Os01g47520
OsAffx.21518.1.S1_at--448--6951Chr01:27488306..27488330 (25 bp)
GTAGCCGATACGTCGGTCCAATTTA
LOC_Os01g47520
OsAffx.21518.1.S1_at--836--6471Chr01:27488312..27488336 (25 bp)
GATACGTCGGTCCAATTTACATGTA
LOC_Os01g47520
OsAffx.21518.1.S1_at--610--10331Chr01:27488327..27488351 (25 bp)
TTTACATGTAAAGAAATGCTCTGGT
LOC_Os01g47520
OsAffx.21518.1.S1_at--24--4811Chr01:27488344..27488368 (25 bp)
GCTCTGGTTGCTAGTGACTGTTTTG
LOC_Os01g47520
OsAffx.21518.1.S1_at--256--9451Chr01:27488346..27488370 (25 bp)
TCTGGTTGCTAGTGACTGTTTTGGA
LOC_Os01g47520
OsAffx.21518.1.S1_at--1074--4971Chr01:27489056..27489080 (25 bp)
GCATGTTTGAATAATATCGGAGCCA
NONE
OsAffx.21518.1.S1_at--962--491Chr01:27489071..27489095 (25 bp)
ATCGGAGCCATCAAATCCAAGACTG
NONE
OsAffx.21518.1.S1_at--1154--2271NONE
AAATCCAAGACTGGCATGCCGCCCG
NONE
Target Sequence 
ATGCTGTCCATACAGTAGCCGATACGTCGGTCCAATTTACATGTAAAGAAATGCTCTGGTTGCTAGTGACTGTTTTGGAT
TTCTGCAGCGAGAAATTCCAATTTGCACGGTTCTCCTTGCCGGCGAGCACGTACTCCCTCCGTATGTTTGGATTAACGAT
GGTTATCCGAAAGACTCCAAGTTCAACCCTTCATATACACGCATGTTTGAATAATATCGGAGCCATCAAATCCAAGACTG
GCATGCCGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis