Browse Element(s) Details


OsAffx.21518.1.S1_s_at

Description gb:NM_191903.1
DB_XREF= gi:34910889
GEN=P0003E08.12
TID=OsAffx.21518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003E08.12 (P0003E08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4752010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21518.1.S1_s_at--486--4871Chr01:27486155..27486368 (25 bp)
GCTATTGTGGTCCATGAGATCAACG
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--310--7591Chr01:27486374..27486398 (25 bp)
GGGCTAGAAGCTTTTGGCACTTGCA
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--310--2691Chr01:27486381..27486405 (25 bp)
AAGCTTTTGGCACTTGCACACTTGT
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--665--10731Chr01:27486394..27486418 (25 bp)
TTGCACACTTGTTCCCTTCACTTGC
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--736--10511Chr01:27486410..27486434 (25 bp)
TTCACTTGCCAAGCTTCGAATGCTG
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--1011--3231Chr01:27486419..27486443 (25 bp)
CAAGCTTCGAATGCTGTCCATACAG
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--243--2191Chr01:27488384..27488408 (25 bp)
AAATTCCAATTTGCACGGTTCTCCT
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--963--10731Chr01:27488394..27488418 (25 bp)
TTGCACGGTTCTCCTTGCCGGCGAG
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--186--7012Chr10:18000796..18000885 (24 bp)
GTACTCCCTCCGTATGTTTGGATTA
NONE
OsAffx.21518.1.S1_s_at--1155--7871Chr01:27489016..27489040 (25 bp)
GGTTATCCGAAAGACTCCAAGTTCA
LOC_Os01g47520
OsAffx.21518.1.S1_s_at--514--3211Chr01:27489033..27489057 (25 bp)
CAAGTTCAACCCTTCATATACACGC
LOC_Os01g47520
Target Sequence 
GCTATTGTGGTCCATGAGATCAACGGAGAGGGGCTAGAAGCTTTTGGCACTTGCACACTTGTTCCCTTCACTTGCCAAGC
TTCGAATGCTGTCCATACAGTAGCCGATACGTCGGTCCAATTTACATGTAAAGAAATGCTCTGGTTGCTAGTGACTGTTT
TGGATTTCTGCAGCGAGAAATTCCAATTTGCACGGTTCTCCTTGCCGGCGAGCACGTACTCCCTCCGTATGTTTGGATTA
ACGATGGTTATCCGAAAGACTCCAAGTTCAACCCTTCATATACACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21518.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis