Browse Element(s) Details


OsAffx.21663.1.S1_at

Description gb:NM_191005.1
DB_XREF= gi:34909093
GEN=P0702B09.14
TID=OsAffx.21663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702B09.14 (P0702B09.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g175203/11hypothetical protein
LOC_Os06g302901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein
LOC_Os12g17500OsAffx.31779.1.S1_at11/1112+10019361..10020049hypothetical protein
LOC_Os12g17510OsAffx.22848.4.S1_at2/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.3.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17510OsAffx.22848.4.S1_x_at1/1112+10025144..10031102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17520OsAffx.31780.2.S1_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_x_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.31780.2.S1_s_at11/1112+10037579..10041323hypothetical protein
LOC_Os12g17520OsAffx.21663.1.S1_at3/1112+10037579..10041323hypothetical protein
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21663.1.S1_at--1149--1952Chr01:34592979..34593068 (25 bp)
ACTCGCCCGGGCTGGCGATTTCATC
NONE
OsAffx.21663.1.S1_at--215--191Chr01:34593061..34593085 (25 bp)
ATTTCATCGGCGCAAGATCAATCCG
NONE
OsAffx.21663.1.S1_at--330--2817Chr11:12449164..12449183 (20 bp)
AAGATCAATCCGAGCCATCCATCGG
NONE
OsAffx.21663.1.S1_at--857--9291Chr01:34593082..34593106 (25 bp)
TCCGAGCCATCCATCGGATCGGATG
NONE
OsAffx.21663.1.S1_at--1150--7991Chr01:34593102..34593126 (25 bp)
GGATGGCAAAGATCAACCCCGCGTC
NONE
OsAffx.21663.1.S1_at--300--8511Chr01:34593105..34593129 (25 bp)
TGGCAAAGATCAACCCCGCGTCGGG
NONE
OsAffx.21663.1.S1_at--974--3311Chr01:34593179..34593203 (25 bp)
CACGCGCGCACATAATGGGCCGGTC
NONE
OsAffx.21663.1.S1_at--370--252Chr04:12730382..12730403 (22 bp)
ATAATGGGCCGGTCCATTTTGGGCT
NONE
OsAffx.21663.1.S1_at--494--9232Chr01:34593202..34593226 (25 bp)
TCCATTTTGGGCTGGCCTTTTCAAT
NONE
OsAffx.21663.1.S1_at--549--8652Chr01:34593209..34593233 (25 bp)
TGGGCTGGCCTTTTCAATAAGAGTG
NONE
OsAffx.21663.1.S1_at--1030--9773Chr06:17479222..17479252 (25 bp)
TAAGAGTGGGCCTTTTATTTATTAT
LOC_Os06g30290
Target Sequence 
ACTCGCCCGGGCTGGCGATTTCATCGGCGCAAGATCAATCCGAGCCATCCATCGGATCGGATGGCAAAGATCAACCCCGC
GTCGGGCCGTAGCCGTCATGGGCCGCGCCGATCTGGGCCGCGTCCGCCTAAGCGCCACGCGCGCACATAATGGGCCGGTC
CATTTTGGGCTGGCCTTTTCAATAAGAGTGGGCCTTTTATTTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis