Browse Element(s) Details


OsAffx.21697.1.S1_at

Description gb:NM_190842.1
DB_XREF= gi:34908767
GEN=P0415A04.17
TID=OsAffx.21697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0415A04.17 (P0415A04.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5776011/11retrotransposon protein, putative, unclassified
LOC_Os10g214792/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified
LOC_Os01g57770Os.6638.1.S1_x_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.46747.1.S1_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.6638.1.S1_at9/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.55355.1.S1_x_at2/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57780NANA1+33743993..33747210retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57790OsAffx.19069.1.S1_at2/111+33749911..33753571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57800OsAffx.7789.1.S1_x_at2/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.8279.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800Os.52731.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.31867.1.S1_x_at1/111+33755449..33762264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21697.1.S1_at--1029--6771Chr01:33731573..33731597 (25 bp)
GTTACCAGATGACCCTTTCGCTAAG
LOC_Os01g57760
OsAffx.21697.1.S1_at--530--5172Chr09:11569489..11569513 (25 bp)
GCAAGATCTTCCTTTGGACTACACA
NONE
OsAffx.21697.1.S1_at--1059--6213Chr12:22179559..22179583 (25 bp)
GAGGCGCATCTTCACCAATGAGAGA
NONE
OsAffx.21697.1.S1_at--613--7511Chr01:33731454..33731478 (25 bp)
GTGGATTAGCAGCATCCGCACGTTG
LOC_Os01g57760
OsAffx.21697.1.S1_at--1034--10811Chr01:33731432..33731456 (25 bp)
TTGTCCATTTTGCTCCTCTGATGAA
LOC_Os01g57760
OsAffx.21697.1.S1_at--746--1092Chr10:10671755..10671993 (25 bp)
AGTGGCAACAATCTGGCACACCTTT
LOC_Os10g21479
OsAffx.21697.1.S1_at--1018--5111Chr01:33731360..33731384 (25 bp)
GCACACCTTTGACCTGGACGAACAA
LOC_Os01g57760
OsAffx.21697.1.S1_at--134--6111Chr01:33731265..33731289 (25 bp)
GAGTCTGGCGCACTATCATGCTTGC
LOC_Os01g57760
OsAffx.21697.1.S1_at--640--3212Chr10:10671802..10671825 (24 bp)
CAAGGTCTTCAATTCCGTTGACGAA
LOC_Os10g21479
OsAffx.21697.1.S1_at--509--1231Chr01:33731171..33731195 (25 bp)
AGTTCTCCGGTGTTGTGCTAGCGAC
LOC_Os01g57760
OsAffx.21697.1.S1_at--767--1631Chr01:33731152..33731176 (25 bp)
AGCGACATTGATCTTTGGTCCCACA
LOC_Os01g57760
Target Sequence 
GTTACCAGATGACCCTTTCGCTAAGCCCATTTGGGACAACCAAGCTCAAGTCAAATGCAAGATCTTCCTTTGGACTACAC
ACAAGAGGCGCATCTTCACCAATGAGAGACGAGCTCAACGTGGATTAGCAGCATCCGCACGTTGTCCATTTTGCTCCTCT
GATGAAGATGTGGAGCATCTCTTCCTACGCTGTGCCGAAGTGGCAACAATCTGGCACACCTTTGACCTGGACGAACAACA
GATCGCCTCCCTGCCGCAGCTTGAAGGTGTCTGGGACATCCCTCCACCCGGACAACCCGCCACTCCACGAGTCTGGCGCA
CTATCATGCTTGCCGTCATGTGGAATATTTGGAAAGGACGCAACAACAAGGTCTTCAATTCCGTTGACGAACCCGCCACG
TTAGTTCTCCGGTGTTGTGCTAGCGACATTGATCTTTGGTCCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis