Browse Element(s) Details


OsAffx.21702.1.S1_at

Description gb:NM_190814.1
DB_XREF= gi:34908711
GEN=OSJNBb0008G24.25
TID=OsAffx.21702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome1, P0703B11.16 (OSJNBb0008G24.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6525011/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21702.1.S1_at--1025--2911Chr01:38190056..38190080 (25 bp)
AAGGAGGCTAATGCTTTGTGGGCTA
LOC_Os01g65250
OsAffx.21702.1.S1_at--418--3691Chr01:38190043..38190067 (25 bp)
CTTTGTGGGCTAGTGGTGAATCTGA
LOC_Os01g65250
OsAffx.21702.1.S1_at--1069--7991Chr01:38189967..38189991 (25 bp)
GGATGGTCCATTTATGTTTAAGCAT
LOC_Os01g65250
OsAffx.21702.1.S1_at--1--4951Chr01:38189946..38189970 (25 bp)
GCATTGTTGGGATGTGCTTAGCAAG
LOC_Os01g65250
OsAffx.21702.1.S1_at--1055--8611Chr01:38189912..38189936 (25 bp)
TGGGACGCCTATTTGGAACGTTTAG
LOC_Os01g65250
OsAffx.21702.1.S1_at--639--7591Chr01:38189840..38189864 (25 bp)
GGGCATCATTTCTCTCTAGATGATG
LOC_Os01g65250
OsAffx.21702.1.S1_at--696--5571Chr01:38189758..38189782 (25 bp)
GAAAGGACCAGGCTATTATAGATCT
LOC_Os01g65250
OsAffx.21702.1.S1_at--133--91Chr01:38189724..38189748 (25 bp)
ATTCCACAAGCTTGTAGATGCTCAG
LOC_Os01g65250
OsAffx.21702.1.S1_at--1026--1551Chr01:38189631..38189655 (25 bp)
AGCTCGAAAGCTTAAGTACCTTGCA
LOC_Os01g65250
OsAffx.21702.1.S1_at--555--6471Chr01:38189549..38189573 (25 bp)
GATACAACTGGGATGCCTGAAGATG
LOC_Os01g65250
OsAffx.21702.1.S1_at--135--1291Chr01:38189522..38189546 (25 bp)
AGATCTGAGCGCATGCTGGCATTGA
LOC_Os01g65250
Target Sequence 
AAGGAGGCTAATGCTTTGTGGGCTAGTGGTGAATCTGAAGTGAATTTGATGGACAGGACAGTGAAAAGTTATGAAGAAGA
TCACAAAAAGGATGGTCCATTTATGTTTAAGCATTGTTGGGATGTGCTTAGCAAGGAACCAAAATGGGACGCCTATTTGG
AACGTTTAGAAGGTTTGGAGCCAGACAAGAGAAAGTTCAATGTTGAGGAGGGTGTGGGGCATCATTTCTCTCTAGATGAT
GCTAGAGATGAACGACCAATAGGGGGCAAGCAAGCTAAGGAGCAGCAGAAACGAAAAAGAAAGGACCAGGCTATTATAGA
TCTTGAAGAGGAATTCCACAAGCTTGTAGATGCTCAGAATACAGCAAATGAGGGCCACAAAGAGATGCTAGAGACACAGA
GGCGTGTGTCTAGTGAGAATGTTGAAGCTCGAAAGCTTAAGTACCTTGCAGAAAAGGAACACAAGGAATCAACCATACTA
GAAACATACAAATCGTTGATGATGCAAGATACAACTGGGATGCCTGAAGATGTGAGATCTGAGCGCATGCTGGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis