Browse Element(s) Details


OsAffx.21729.1.S1_x_at

Description gb:NM_190661.1
DB_XREF= gi:34908405
GEN=OJ1402_H07.1
TID=OsAffx.21729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1402_H07.1 (OJ1402_H07.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g098501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21729.1.S1_x_at--805--2731Chr01:37267802..37267826 (25 bp)
AAGAGCGGGTTTCTCGTGGCGGCCA
NONE
OsAffx.21729.1.S1_x_at--399--3792Chr01:37267814..37267838 (25 bp)
CTCGTGGCGGCCATCGGAGAGAAGG
NONE
OsAffx.21729.1.S1_x_at--1127--9351Chr01:37267846..37267870 (25 bp)
TCGACAGGAAGGAGCTAGGCGACCT
NONE
OsAffx.21729.1.S1_x_at--88--2931Chr01:37267854..37267878 (25 bp)
AAGGAGCTAGGCGACCTCGTGTCCC
NONE
OsAffx.21729.1.S1_x_at--665--3791Chr01:37267901..37267925 (25 bp)
CTCGAGCTCCTTGGCCTACCAGCGA
NONE
OsAffx.21729.1.S1_x_at--454--3391NONE
CAGCGAGCGCGCATGAAGACCGAGT
NONE
OsAffx.21729.1.S1_x_at--148--4612Chr06:21161657..21161942 (25 bp)
GCGAGCGCGCATGAAGACCGAGTCA
NONE
OsAffx.21729.1.S1_x_at--1045--1775Chr07:29385145..29385171 (25 bp)
ACCGCTGTAAACCACCGAGGGATCT
NONE
OsAffx.21729.1.S1_x_at--694--4135Chr03:10464346..10464365 (20 bp)
CGCTGTAAACCACCGAGGGATCTCA
NONE
OsAffx.21729.1.S1_x_at--875--10372Chr01:37268243..37268267 (25 bp)
TTTTGATAGTTGAGGATCTGTTATA
NONE
OsAffx.21729.1.S1_x_at--852--6651Chr01:37268251..37268275 (25 bp)
GTTGAGGATCTGTTATATCTGGTTT
NONE
Target Sequence 
AAGAGCGGGTTTCTCGTGGCGGCCATCGGAGAGAAGGGCGATGATCGACAGGAAGGAGCTAGGCGACCTCGTGTCCCCTC
CCGACATCCTTCCTCCCTCCTCGAGCTCCTTGGCCTACCAGCGAGCGCGCATGAAGACCGAGTCAAACTAGCCACGTCAG
CCAAAACCGCTGTAAACCACCGAGGGATCTCATTTGCACCGGTTTTGATAGTTGAGGATCTGTTATATCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21729.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis