Browse Element(s) Details


OsAffx.21755.1.S1_x_at

Description gb:NM_190538.1
DB_XREF= gi:34908159
GEN=P0408C03.23
TID=OsAffx.21755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0408C03.23 (P0408C03.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g108802/11hypothetical protein
LOC_Os07g441201/11hypothetical protein
LOC_Os02g415001/11Calcium binding EGF domain containing protein, expressed
LOC_Os05g109701/11Zinc knuckle family protein
LOC_Os03g322601/11hypothetical protein
LOC_Os05g314501/11hypothetical protein
LOC_Os10g187501/11hypothetical protein
LOC_Os07g270901/11hypothetical protein
LOC_Os04g261801/11hypothetical protein
LOC_Os04g288001/11hypothetical protein
LOC_Os02g530901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10860OsAffx.24317.6.S1_x_at7/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10860OsAffx.12663.1.S1_at1/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10870OsAffx.25970.2.S1_s_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_x_at9/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.1.S1_at3/114+5874430..5876117hypothetical protein
LOC_Os04g10880OsAffx.21755.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880OsAffx.10222.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880Os.45902.1.A1_x_at1/114+5879059..5882459hypothetical protein
LOC_Os04g10890OsAffx.25972.1.S1_at11/114+5884795..5886768Zinc knuckle family protein
LOC_Os04g10900NANA4+5888237..5889715retrotransposon protein, putative, unclassified
LOC_Os04g10910OsAffx.13762.1.S1_at10/114+5891722..5894579hypothetical protein
LOC_Os04g10924OsAffx.25973.1.S1_at11/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.13763.1.S1_at6/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.16205.1.S1_at2/114+5900306..5904584hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21755.1.S1_x_at--840--74323Chr12:1089016..1089268 (25 bp)
GTGTATGCCGGTGACTCGATGCCTC
NONE
OsAffx.21755.1.S1_x_at--122--856Chr12:17321292..17321462 (25 bp)
AGTCGGCTTGGTGTCTAACCGGCGA
NONE
OsAffx.21755.1.S1_x_at--1071--25912Chr12:17321454..17321473 (20 bp)
AACCGGCGACTCACCGGCGGCAAGG
NONE
OsAffx.21755.1.S1_x_at--619--1774Chr04:15270874..15270898 (25 bp)
ACCGGCTAGGGCGAGGCGGTCAGAC
NONE
OsAffx.21755.1.S1_x_at--364--5012Chr06:4086594..4086613 (20 bp)
GCAGGCAATCTTCAGGCGGTTGAAC
NONE
OsAffx.21755.1.S1_x_at--612--9632Chr07:15861266..15861290 (25 bp)
TCAGGCGGTTGAACCGAGTGATCAA
NONE
OsAffx.21755.1.S1_x_at--979--4057Chr11:18533658..18533728 (25 bp)
CGAGTGATCAACATCGGTCAGACCG
NONE
OsAffx.21755.1.S1_x_at--951--9431Chr01:36425004..36425028 (25 bp)
TCGGTCAGACCGACAGCGCGAGCGC
NONE
OsAffx.21755.1.S1_x_at--215--1791Chr01:36425012..36425036 (25 bp)
ACCGACAGCGCGAGCGCGGTCAGAC
NONE
OsAffx.21755.1.S1_x_at--738--7951Chr01:36425041..36425065 (25 bp)
GGATCAACTTCGGTTAGACCGATCT
NONE
OsAffx.21755.1.S1_x_at--938--6773Chr06:24603897..24603920 (24 bp)
GTTAGACCGATCTACATCGAATTTA
NONE
Target Sequence 
GTGTATGCCGGTGACTCGATGCCTCGAGAGAGTATTTGCGGTGATGGACCGGGAGTCGGCTTGGTGTCTAACCGGCGACT
CACCGGCGGCAAGGCGGCGGTCAGACCGGCTAGGGCGAGGCGGTCAGACCGGCGGCGACTTCACACGCGGCAGGCAATCT
TCAGGCGGTTGAACCGAGTGATCAACATCGGTCAGACCGACAGCGCGAGCGCGGTCAGACCGGCGGATCAACTTCGGTTA
GACCGATCTACATCGAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21755.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis