Browse Element(s) Details


OsAffx.21778.2.S1_x_at

Description gb:NM_190353.1
DB_XREF= gi:34907789
GEN=P0703B11.15
TID=OsAffx.21778.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.15 (P0703B11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g413508/11transposon protein, putative, Pong sub-class
LOC_Os01g605804/11transposon protein, putative, Pong sub-class
LOC_Os10g311303/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21778.2.S1_x_at--538--8871Chr01:35351287..35351311 (25 bp)
TGAGGCTATAGCTTCATATGACCTT
LOC_Os01g60580
OsAffx.21778.2.S1_x_at--911--8273Chr10:21895727..21895751 (25 bp)
GGCATGCATTCTTTGGTATTCCTGG
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--897--3553Chr10:21895764..21895788 (25 bp)
CATTAATGTGCTCAATCAGTCCCCT
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--779--3453Chr10:21895780..21895804 (25 bp)
CAGTCCCCTCTGTTTATTGAAGCAA
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--816--2693Chr10:21896006..21896030 (25 bp)
AAGCTCGCTTCAACATCGTGCATCG
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--350--573Chr10:21896132..21896156 (25 bp)
ATCCTATTGACTTGAATGCTGCCCC
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--91--9114Chr10:21896148..21896172 (25 bp)
TGCTGCCCCAGGAACATCAATTGTT
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--886--8033Chr10:21896195..21896219 (25 bp)
GGAGTAATGATCACCCAAGCTTCAG
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--92--4392Chr10:21896209..21896233 (25 bp)
CCAAGCTTCAGCGATGTGCGGCGAA
LOC_Os10g41350
OsAffx.21778.2.S1_x_at--601--5571Chr01:35350748..35350772 (25 bp)
GAAATGCTTATATCCGAGCCAAACC
NONE
OsAffx.21778.2.S1_x_at--352--2651Chr01:35350727..35350751 (25 bp)
AACCAATCCATAGTCAGCTTAAAAA
NONE
Target Sequence 
TGAGGCTATAGCTTCATATGACCTTCATATTTGGCATGCATTCTTTGGTATTCCTGGGTCCAACAATGACATTAATGTGC
TCAATCAGTCCCCTCTGTTTATTGAAGCAATAAAAGAGAAGCACAAGCTGTTTGCAAGGGAACAAGAAGGGAAACAGAAA
GATATTGAGTGTGCTTTTGGGGTGTTGCAAGCTCGCTTCAACATCGTGCATCGTCCAGCACGATCATGGAGCCAAAAAGT
TCTTCGAAAAATCATGCAAGCTTGTGTAATTCTCCACAACATGATAGTGGAAGACGAGGGAGAAATGGCAGAAGATCCTA
TTGACTTGAATGCTGCCCCAGGAACATCAATTGTTCTTCCACCAGAAGTTCATGCAGGGAGTAATGATCACCCAAGCTTC
AGCGATGTGCGGCGAAGAAATGCTTATATCCGAGCCAAACCAATCCATAGTCAGCTTAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21778.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis