Browse Element(s) Details


OsAffx.21787.3.S1_at

Description tigr:9629.m06726
TID=OsAffx.21787.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6766010/11hypothetical protein
LOC_Os01g676803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21787.3.S1_at--466--1832Chr01:39648575..39648599 (25 bp)
ACGAAGAAACTAGTCAGGGTGAGGA
LOC_Os01g67660
OsAffx.21787.3.S1_at--319--2331Chr01:39648602..39648626 (25 bp)
AAAGTAGAGGTCGTGCTGCCAGTAG
LOC_Os01g67660
OsAffx.21787.3.S1_at--325--9112Chr01:39648615..39648639 (25 bp)
TGCTGCCAGTAGAGGTGCTGCCGCC
LOC_Os01g67660
OsAffx.21787.3.S1_at--542--3551Chr01:39648661..39648685 (25 bp)
CATCTGCAAGCACAAGGTACACGAA
LOC_Os01g67660
OsAffx.21787.3.S1_at--16--7851Chr01:39648676..39648700 (25 bp)
GGTACACGAATGGATCACGCCGGAG
LOC_Os01g67660
OsAffx.21787.3.S1_at--353--6451Chr01:39648688..39648712 (25 bp)
GATCACGCCGGAGGATTACACATTC
LOC_Os01g67660
OsAffx.21787.3.S1_at--961--4151Chr01:39648693..39648717 (25 bp)
CGCCGGAGGATTACACATTCAGGTT
LOC_Os01g67660
OsAffx.21787.3.S1_at--90--2191Chr01:39648705..39648729 (25 bp)
ACACATTCAGGTTGTTAGATCTCAA
LOC_Os01g67660
OsAffx.21787.3.S1_at--968--7911Chr01:39648714..39648738 (25 bp)
GGTTGTTAGATCTCAACCTGGTGCT
LOC_Os01g67660
OsAffx.21787.3.S1_at--612--3732Chr01:39648737..39648757 (21 bp)
CTCACCTTGGCTGCCGTCGGGAAAA
LOC_Os01g67660
OsAffx.21787.3.S1_at--673--4771NONE
GCTGCCGTCGGGAAAAATGGTGACA
NONE
Target Sequence 
ACGAAGAAACTAGTCAGGGTGAGGAAGAAAGTAGAGGTCGTGCTGCCAGTAGAGGTGCTGCCGCCGCTGCCGCCGTCGTT
GGCCATCATCTGCAAGCACAAGGTACACGAATGGATCACGCCGGAGGATTACACATTCAGGTTGTTAGATCTCAACCTGG
TGCTCACCTTGGCTGCCGTCGGGAAAAATGGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21787.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis