Browse Element(s) Details


OsAffx.21804.2.S1_x_at

Description tigr:9629.m06610
TID=OsAffx.21804.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6664011/11D-mannose binding lectin family protein, expressed
LOC_Os01g455201/11D-mannose binding lectin family protein
LOC_Os01g666301/11S-domain receptor-like protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21804.2.S1_x_at--301--4391Chr01:39033751..39033775 (25 bp)
CCAAGGGATTGGCTTATCTGCATGA
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--464--7711Chr01:39033777..39033801 (25 bp)
GGGTGCCGAGATTGCATCATACATT
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--446--8131Chr01:39033830..39033854 (25 bp)
GGACATGTCATTTACCCCAAAAGTG
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--1041--5131Chr01:39033870..39033894 (25 bp)
GCAAAGCTCTTAGGCCGGGATTTCA
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--543--3293Chr01:39033970..39033994 (25 bp)
CAAAGGCAGATGTTTTCAGCTATGG
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--1081--6331Chr01:39033998..39034022 (25 bp)
GATGCTATTTGAGATCATTTCCAGA
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--74--10231Chr01:39034060..39034084 (25 bp)
TATTCTTTCCTGTGCTAGTTGCAAG
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--947--2851Chr01:39034102..39034126 (25 bp)
AAGTGCTTACACTGTTGGATTCTGA
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--508--8611Chr01:39034182..39034206 (25 bp)
TGGTGCATTCAAGACGACGAGAGCT
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--607--5771Chr01:39034197..39034221 (25 bp)
GACGAGAGCTCCAGGCCAACAATGG
LOC_Os01g66640
OsAffx.21804.2.S1_x_at--280--6951Chr01:39034251..39034275 (25 bp)
GTAGATATCGAAGTGCCACCTGCCC
LOC_Os01g66640
Target Sequence 
CCAAGGGATTGGCTTATCTGCATGATGGGTGCCGAGATTGCATCATACATTGTGATATTAAACCACAGAATATACTACTG
GACATGTCATTTACCCCAAAAGTGGCAGATTTTGGGATGGCAAAGCTCTTAGGCCGGGATTTCAGTAGGGTTTTGACTTC
AATTAGGGGCACAATAGGATATCTTGCACCGGAGTGGATAAGTGGTGAGTCCATAACAACAAAGGCAGATGTTTTCAGCT
ATGGGATGATGCTATTTGAGATCATTTCCAGAAAGAGAAATCTAACACAAACAGAGACAAGAACAGAAATATTCTTTCCT
GTGCTAGTTGCAAGGAAGCTTGTACAAGGAGAAGTGCTTACACTGTTGGATTCTGAATTGGTGGATGATGTGAACTTAGA
GGAGCTTGAAAGGGCGTGCAAGGTTGCTTGCTGGTGCATTCAAGACGACGAGAGCTCCAGGCCAACAATGGCAGAAGTTC
TTCAAATGCTAGAAGGATTGGTAGATATCGAAGTGCCACCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21804.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis