Browse Element(s) Details


OsAffx.21847.1.S1_s_at

Description tigr:9629.m06841
TID=OsAffx.21847.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6884011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21847.1.S1_s_at--521--2851Chr01:40325279..40325303 (25 bp)
AAGTCCTGCGACTGCCTCGGCTGCA
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--447--4271Chr01:40325265..40325289 (25 bp)
CCTCGGCTGCAACCTCTAAGAAAAA
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--174--5531Chr01:40325246..40325270 (25 bp)
GAAAAAGGTGCTCCTCATCATCTGC
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--1124--9572Chr08:3685..3782 (25 bp)
TCTTGGCTTCTTGCGATGAATTTGT
NONE
OsAffx.21847.1.S1_s_at--381--4911Chr01:40325215..40325239 (25 bp)
GCTTCTTGCGATGAATTTGTTGAGA
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--445--2251Chr01:40325155..40325179 (25 bp)
AAATATTGCGAGTGATAGCGAAAGT
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--400--3631Chr01:40325073..40325097 (25 bp)
GCTTAGTTTAAGTGACAATTGTTAC
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--21--5611Chr01:40325060..40325084 (25 bp)
GACAATTGTTACTGTTTCTAGCTAT
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--847--6831Chr01:40325047..40325071 (25 bp)
GTTTCTAGCTATTTTCTTCTTGTGA
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--1036--4871Chr01:40325040..40325064 (25 bp)
GCTATTTTCTTCTTGTGATCATTGT
LOC_Os01g68840
OsAffx.21847.1.S1_s_at--832--271Chr01:40325014..40325038 (25 bp)
ATATGGTGTATTGGTGTAGTTGCTA
LOC_Os01g68840
Target Sequence 
AAGTCCTGCGACTGCCTCGGCTGCAACCTCTAAGAAAAAGGTGCTCCTCATCATCTGCTTCTTGGCTTCTTGCGATGAAT
TTGTTGAGAGTGATGAGAATTTGAAGATGAGAGGAGTATCATTTAAATATTGCGAGTGATAGCGAAAGTAGTAGAGAGTG
AGAGAGTGGGGGTAGGAGAAAAGGGATATATGTCTCCCCCGTTAATGCTTAGTTTAAGTGACAATTGTTACTGTTTCTAG
CTATTTTCTTCTTGTGATCATTGTTATATGGTGTATTGGTGTAGTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21847.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis